BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZC03FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1335 1631 0.0
>3x_Contig1335
Length = 8696
Score = 1631 bits (823), Expect = 0.0
Identities = 842/847 (99%), Gaps = 1/847 (0%)
Strand = Plus / Plus
Query: 86 atgaaagtacttgtaacaaccatcatttaactttgcccttattcgacaccagattgagaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1305 atgaaagtacttgtaacaaccatcatttaactttgcccttattcgacaccagattgagaa 1364
Query: 146 atgttggtaaattcgatgttgactttgaagtaatcttcccatacggaggaaaatctttgg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1365 atgttggtaaattcgatgttgactttgaagtaatcttcccatacggaggaaaatctttgg 1424
Query: 206 aagtcactaattattaaacttattggaagtccacaagtggtggtggagctaacaataata 265
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1425 aagtcactaaatatgaaacttattggaagtccacaagtggtggtggagctaacaataata 1484
Query: 266 atacgtcgttgtccacatctttgcaatccattgtaactgcatcatctttaaatggaaagt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1485 atacgtcgttgtccacatctttgcaatccattgtaactgcatcatctttaaatggaaagt 1544
Query: 326 attgtaccattggtgttatacagttaaacgatggtactttgattgcaagtactagtttaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1545 attgtaccattggtgttatacagttaaacgatggtactttgattgcaagtactagtttaa 1604
Query: 386 tctgtcatgctggggatgtgccgttactatttaacgatatgaacgcaaaacagctaaaca 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1605 tctgtcatgctggggatgtgccgttactatttaacgatatgaacgcaaaacagctaaaca 1664
Query: 446 gcatgcttgatcagcagatatctgatattccagccaatataacctccaggctaacattga 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1665 gcatgcttgatcagcagatatctgatattccagccaatataacctccaggctaacattga 1724
Query: 506 aaactcttttgagagacagatatgtcttatttgaggatctattaaataatgtcgacccac 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1725 aaactcttttgagagacagatatgtcttatttgaggatctattaaataatgtcgacccac 1784
Query: 566 aaattcagctcaacataaaggttttgttcccaacagaatctgagatacaatctataccaa 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1785 aaattcagctcaacataaaggttttgttcccaacagaatctgagatacaatctataccaa 1844
Query: 626 tgaaagtttctcctagatacaatttgaattgtttcatagaaacagtcttatctactacgt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1845 tgaaagtttctcctagatacaatttgaattgtttcatagaaacagtcttatctactacgt 1904
Query: 686 ttgaacatgtaaggaaacttcgtcaaatgggatcgacgagatcaatagtattctcttcaa 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1905 ttgaacatgtaaggaaacttcgtcaaatgggatcgacgagatcaatagtattctcttcaa 1964
Query: 746 caaatccaagagtttgctctatcttgaattggaagcaacctaatttccctgtgttgttcg 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1965 caaatccaagagtttgctctatcttgaattggaagcaacctaatttccctgtgttgttcg 2024
Query: 806 atatgaatgttatttccgagaatagtgatggtgatttggtgaaaattacatcttatgacc 865
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2025 atatgaatgttatttccgagaatagtgatggtgatttggtgaaaattacatctaatgacc 2084
Query: 866 tagcgtccatggcactcgatactaaagacattatttatggtgaacccagttaccatgtcc 925
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 2085 tagcgtccatggcactcgatactaaagacattatttatggtg-acccaggtaccatgtcc 2143
Query: 926 ataaagg 932
|||||||
Sbjct: 2144 ataaagg 2150
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6778
Number of Sequences: 1807
Number of extensions: 6778
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)