BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZC03RM1.SCF screened BAC_end
(966 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1638 1104 0.0
>3x_Contig1638
Length = 14042
Score = 1104 bits (557), Expect = 0.0
Identities = 660/684 (96%), Gaps = 8/684 (1%)
Strand = Plus / Minus
Query: 48 tggaaggcaagacagcatggatataatgagctagaaagcacattcaataaactgtccgtt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12099 tggaaggcaagacagcatggatataatgagctagaaagcacattcaataaactgtccgtt 12040
Query: 108 gctagagttgcagagagtggcgttaataagtattggaagaaacctgagattttcacgggg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12039 gctagagttgcagagagtggcgttaataagtattggaagaaacctgagattttcacgggg 11980
Query: 168 tacgtattggattccaatgttgttgcacaagaatctgccgttaaggccttgtacagtttg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11979 tacgtattggattccaatgttgttgcacaagaatctgccgttaaggccttgtacagtttg 11920
Query: 228 ttgaaatttatgatcgacgtaccccagatcagagatttgtgtcagccgggtcaattggtt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11919 ttgaaatttatgatcgacgtaccccagatcagagatttgtgtcagccgggtcaattggtt 11860
Query: 288 caaggctgggttccagctctggtggagaaaggtatgacttcctcgaaatcagcgacgaaa 347
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11859 cagggctgggttccagctctggtggagaaaggtatgacttcctcgaaatcagcgacgaaa 11800
Query: 348 gatgcttcattggcctgcgtttcgcttgtcgtgtcattggatgataatatcgtaaatgca 407
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11799 gaggcttcattggcctgcgtttcgcttgtcgtgtcattggatgataatatcgtaaatgca 11740
Query: 408 atcaattgtctgacgccgatttggaccaaaaaattaccgaagctgttgactgcagcgtta 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11739 atcaattgtctgacgccgatttggaccaaaaaattaccgaagctgttgactgcagcgtta 11680
Query: 468 atggttcatgtaaagttgatagagcagtttgggttcgtgaacgtttctcaacaagagaag 527
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 11679 atggttcatgtaaagttgatagagcagtttgggttcgtgaacgtttctcaacaggagaag 11620
Query: 528 aatgc-atcgttacagggtctagtggaagttttacctaaactttgctcacatgccggat- 585
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 11619 -atgcaatcgttacagggtctagtggaagttttacctaaactttgctcacatg-cggata 11562
Query: 586 aatctgtgaaggatgagtcaatgcagttgattttac-actatatacatggntttataaaa 644
||||||||| | |||||||||||||||||||||||| ||||||||||||| || || |||
Sbjct: 11561 aatctgtgaggaatgagtcaatgcagttgattttacaactatatacatggtttaat-aaa 11503
Query: 645 cctgtactttaagagcttctattggggaaatttgaagccc-ttcaacaaaaagaactgaa 703
||||||||| ||||||||||||||||| || ||||||||| | ||||| || || ||| |
Sbjct: 11502 cctgtacttcaagagcttctattgggg-aagttgaagcccatacaacagaaggacctgga 11444
Query: 704 taaactgtttgaattggaccaggg 727
|||||||||||||| | |||||||
Sbjct: 11443 taaactgtttgaatcgtaccaggg 11420
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7423
Number of Sequences: 1807
Number of extensions: 7423
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 966
length of database: 10,358,551
effective HSP length: 16
effective length of query: 950
effective length of database: 10,329,639
effective search space: 9813157050
effective search space used: 9813157050
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)