BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC9ZC04RM1.SCF screened BAC_end (983 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1410 975 0.0 >3x_Contig1410 Length = 7640 Score = 975 bits (492), Expect = 0.0 Identities = 540/552 (97%), Gaps = 3/552 (0%) Strand = Plus / Minus Query: 49 cttggtatgggacggtgtgcgatggggagaatgcagcctgttccacttgagcgaagtaat 108 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5535 cttggtatgggacggtgtgcgatggggagaatgcagcctgttccacttgagcgaagtaat 5476 Query: 109 tttctggattttcattcaaaaccatcttacctacacgacgcaatgggaactgcttatgag 168 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5475 tttctggattttcattcaaaaccatcttacctacacgacgcaatgggaactgcttatgag 5416 Query: 169 gccaaacttttgttagatcgaatacagagaatggcaatttttctgcctcttcttcggtca 228 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5415 gccaaacttttgttagatcgaatacagagaatggcaatttttctgcctcttcttcggtca 5356 Query: 229 tagtttgaatgtaaagggtccaagatgggtaattacccttggcgatgttttcaaacaaat 288 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5355 tagtttgaatgtaaagggtccaagatgggtaattacccttggcgatgttttcaaacaaat 5296 Query: 289 ccttttgacagtagtcagggttttcaccagccaacttagtcgcctcctcgttgttcaagt 348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5295 ccttttgacagtagtcagggttttcaccagccaacttagtcgcctcctcgttgttcaagt 5236 Query: 349 tcttaataccttgatctgtcttcaaatgcacttgcacgtagcgccattcaccttgcttgt 408 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5235 tcttaataccttgatctgtcttcaaatgcacttgcacgtagcgccattcaccttgcttgt 5176 Query: 409 tagaccatttgtaagtatgacccgagtaactgttcatgttacgataagaagctggagtac 468 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5175 tagaccatttgtaagtatgacccgagtaactgttcatgttacgataagaagctggagtac 5116 Query: 469 cacgatcggagaacaagatcattacttgatgaattgcgacttgattcttctttgtcgtca 528 |||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||| Sbjct: 5115 cacgatcggagaacaagatcatcacttgatgaattgcgacttgattctcctctgtcgtca 5056 Query: 529 aaaagtccc-aaacatgtcagcattccttataatgggtttctgggtttctctttttgaat 587 ||||||||| ||||||||||||| ||||| || |||||||||||||||| |||||| | Sbjct: 5055 aaaagtcccaaaacatgtcagca-tccttcatattggtttctgggtttctc-ttttgagt 4998 Query: 588 ataaatgaaatg 599 || ||||||||| Sbjct: 4997 atgaatgaaatg 4986 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,866 Number of Sequences: 1807 Number of extensions: 13866 Number of successful extensions: 109 Number of sequences better than 1.0e-20: 1 length of query: 983 length of database: 10,358,551 effective HSP length: 16 effective length of query: 967 effective length of database: 10,329,639 effective search space: 9988760913 effective search space used: 9988760913 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)