BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZC05FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1646 1503 0.0
>3x_Contig1646
Length = 14145
Score = 1503 bits (758), Expect = 0.0
Identities = 830/851 (97%), Gaps = 4/851 (0%)
Strand = Plus / Plus
Query: 86 ccgaacccctacagcgtgtacgaggtgctggggaattctttgaaatgtttcatataccaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7355 ccgaacccctacagcgtgtacgaggtgctggggaattctttgaaatgtttcatataccaa 7414
Query: 146 tgcgatgtaagatggatgaacaatccgatttttggagctgcatcggaggctttcgagata 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7415 tgcgatgtaagatggatgaacaatccgatttttggagctgcatcggaggctttcgagata 7474
Query: 206 ttggccaaagctttttatattgcaagattgccaatgcctttagataaggaaagtatctgg 265
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7475 ttggccaaagcatcatatattgcaagattgccaatgcctttagataaggaaagtatctgg 7534
Query: 266 tttaagagagcaatgcagttgcagaaacaagcatactatcacacgccaagcatactaccg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7535 tttaagagagcaatgcagttgcagaaacaagcatactatcacacgccaagcatactaccg 7594
Query: 326 agtgctgaccagacttctctagaggagaaggtttatcaaaactgtaaaacaaatttactt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7595 agtgctgaccagacttctctagaggagaaggtttatcaaaactgtaaaacaaatttactt 7654
Query: 386 gtgggagaagttgttgccaagacatcctttctactaatctccaaagttattcaatacaaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7655 gtgggagaagttgttgccaagacatcctttctactaatctccaaagttattcaatacaaa 7714
Query: 446 gaatttgaccttttatcataccaaaacacagtttctgagatagttgataacatggaaaaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7715 gaatttgaccttttatcataccaaaacacagtttctgagatagttgataacatggaaaaa 7774
Query: 506 ataccaaagaaagacttcatttggggactccttacatggtctgtcatcgtctgcggaata 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7775 ataccaaagaaagacttcatttggggactccttacatggtctgtcatcgtctgcggaata 7834
Query: 566 ttcactgtagacacggaaaatcaaaagaagatattatcatatcttgactacattagagac 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7835 ttcactgtagacacggaaaatcaaaagaagatattatcatatcttgactacattagagac 7894
Query: 626 aaattccacatgttgccattatttaactcgaaactatttctttttaagacatgggagtta 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7895 aaattccacatgttgccattatttaactcgaaactatttctttttaagacatgggagtta 7954
Query: 686 ccgttagctgataggtcagatgttctctttgatagagaaaatcttacctgngtcaatgct 745
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 7955 ccgttagctgataggtcagatgttctctttgatagagaaaatcttacctgggtcaatgct 8014
Query: 746 taagcaattgcagtttagtatacatttttatgataagttctttattttaaagtacaatta 805
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 8015 taagcaattgcagtttagtataca-ttttatgataagttctttattttaagtaacaatta 8073
Query: 806 caatacacggacatacntttagccaaaactacgaaagaatcaagcannatgataattttc 865
|||||||||||||||| || ||||||||||||||||| |||||||| ||||||| ||||
Sbjct: 8074 caatacacggacatactttaagccaaaactacgaaag-atcaagcaaaatgataa-tttc 8131
Query: 866 aat-atagttattaggatatttnatatgttttacanaatgctcatcatgtggacggcaaa 924
||| |||||||| ||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct: 8132 aataatagttataaggatatttattatgttttacagaatgctcatcatgttgacggcaaa 8191
Query: 925 cttanatacat 935
|||| ||||||
Sbjct: 8192 cttagatacat 8202
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6798
Number of Sequences: 1807
Number of extensions: 6798
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)