BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZC05RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1190 1176 0.0
>3x_Contig1190
Length = 5329
Score = 1176 bits (593), Expect = 0.0
Identities = 661/677 (97%), Gaps = 5/677 (0%)
Strand = Plus / Minus
Query: 47 tatagtgccttgcgattcaataaacgatgattcca-cattctttt-aatgtaggagattg 104
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 4717 tatagtgccttgcgattcaataaacgatgattccaacattcttttcaatgtaggagattg 4658
Query: 105 catagcaacatctctattcacagtacgactatcacctgtactactgaccaacgatatttc 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4657 catagcaacatctctattcacagtacgactatcacctgtactactgaccaacgatatttc 4598
Query: 165 ttccatttattctgccagagtagcttaagagtttcgacttactcctttattctgcaacgt 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4597 ttccatttattctgccagagtagcttaagagtttcgacttactcctttattctgcaacgt 4538
Query: 225 tttcatttcgaagtgagttctgccaaagaggtttgcattataatattgatattaatacta 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4537 tttcatttcgaagtgagttctgccaaagaggtttgcattataatattgatattaatacta 4478
Query: 285 tttattaaatgtaacctttaaataaaatgatgttaaagtagcaaatattgcagtgtagaa 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4477 tttattaaatgtaacctttaaataaaatgatgttaaagtagcaaatattgcagtgtagaa 4418
Query: 345 ggaaaaggctactgctgagtaccgttgagttgattagaaagttgccaagtggagctaaca 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4417 ggaaaaggctactgctgagtaccgttgagttgattagaaagttgccaagtggagctaaca 4358
Query: 405 gctcgtgaatagataggaagcatggatctgaacccttcgttgaattgggaacgtttgcaa 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4357 gctcgtgaatagataggaagcatggatctgaacccttcgttgaattgggaacgtttgcaa 4298
Query: 465 tcactgttttacagatcacagacattacaatctattgggcgcaaaccctcagcaacaggg 524
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 4297 tcactgttttacagatcacagacattacaatctattgggcgcaaaccttcagcaacaggg 4238
Query: 525 ttgtccgtgtatttggttgctgaaccagaggaaaccttcgtttacaattacactgatgaa 584
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 4237 ttgtccgtgtatttggttgctgaaccagagaaaaccttcgtttacaattacactgatgaa 4178
Query: 585 ctgcacctaactctaaat-atgaagcgcttcctttcgctcatctgaaaagtgttatagaa 643
||||| |||||||||||| |||| |||||||||| ||||||||||||||||||||||| |
Sbjct: 4177 ctgcaactaactctaaatcatgaggcgcttccttccgctcatctgaaaagtgttatag-a 4119
Query: 644 agacgatcaattggtcggtatcatgaaagatagagttaaggtttatctcttacttttaac 703
||||||||||||||||| |||||||||||||||||||| ||| ||||||| |||| ||||
Sbjct: 4118 agacgatcaattggtcgttatcatgaaagatagagttagggtatatctctcacttataac 4059
Query: 704 cg-agatttcaaggagc 719
|| ||| ||||||||||
Sbjct: 4058 cgaagaattcaaggagc 4042
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6058
Number of Sequences: 1807
Number of extensions: 6058
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)