BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC9ZC06RM1.SCF screened BAC_end (967 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1469 1231 0.0 >3x_Contig1469 Length = 9240 Score = 1231 bits (621), Expect = 0.0 Identities = 718/746 (96%), Gaps = 4/746 (0%) Strand = Plus / Minus Query: 48 ttcactttctatgtaatggattctatctgtaagaacgctggttctccgtatacgatctat 107 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6376 ttcactttctatgtaatggattctatctgtaagaacgctggttctccgtatacgatctat 6317 Query: 108 ttctctaagaatttgcataaattgttccgtaaaacttatttacttgtggataatcagact 167 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6316 ttctctaagaatttgcataaattgttccgtaaaacttatttacttgtggataatcagact 6257 Query: 168 agaaccaagatgatttcaatgttcaaaacgtggatggtgccattgcctgcatgagacttg 227 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 6256 agaaccaagatgatttcaatgttcaaaacgtggatggtgccattgcctgcaggagacttg 6197 Query: 228 atgttcgatcatagttctttgaacagcatcgagaattttttgattaaagctagtgcgttg 287 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 6196 atgttcgatcatagttctttgaacagcatcgagaattttttgattaaggctagtgcgttg 6137 Query: 288 catcagaaaagtgctactccgccggcgatacaacaacataccgctcacaacggaccggct 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6136 catcagaaaagtgctactccgccggcgatacaacaacataccgctcacaacggaccggct 6077 Query: 348 gggtcgaatattactgtgaaatcgttactgtcggatattgataaattagcgctgattacg 407 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6076 gggtcgaatattactgtgaaatcgttactgtcggatattgataaattagcgctgattacg 6017 Query: 408 cagtcgaagctagtaagtacaccggatgacgccaagttgcaggcaaaagtagcgatattg 467 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6016 cagtcgaagctagtaagtacaccggatgacgccaagttgcaggcaaaagtagcgatattg 5957 Query: 468 aagcagttgagacaagagttgcagaaggaacggttggcaccggagtttttgtcgcaagtt 527 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5956 aagcagttgagacaagagttgcagaaggaacggttggcaccggagtttttgtcgcaagtt 5897 Query: 528 catcagcagctcaaacagatttttgcgcaagatcatcaacagcatcaatcacaacagcag 587 |||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||| Sbjct: 5896 catcagcagctcaaacagatttttgcgcaagaacatcaacagcaacaacaacaacagcag 5837 Query: 588 cagcagcagttgccattacaaaataactctcagtttctgccgncatcatctcaaagttct 647 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct: 5836 cagcagcagttgccattacaaaataactctcagtttctgccgccatcatctcaaggttct 5777 Query: 648 gt-aacaatgatatgtctcgtggctcactccaagcgaaccgtaacaacaggctcgatgtt 706 || ||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||| Sbjct: 5776 gtaaacaatgatatgtctcgtggctcactccaggcgaacggtaacaac-ggctcgatgtt 5718 Query: 707 ccgaagaagccctcaatttaaatgctccatttnttgaccaactggacaactttaaccgnt 766 | || |||||| ||||||| |||||||||||| | |||||||| ||||| |||||| Sbjct: 5717 cggaggaagccttcaattt-aatgctccatttttgaaccaactgaccaactctaaccgtc 5659 Query: 767 ctaataagcttttctattttggttaa 792 ||||||| |||||| ||||||||| Sbjct: 5658 tcaataagc-tttctagtttggttaa 5634 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7509 Number of Sequences: 1807 Number of extensions: 7509 Number of successful extensions: 222 Number of sequences better than 1.0e-20: 1 length of query: 967 length of database: 10,358,551 effective HSP length: 16 effective length of query: 951 effective length of database: 10,329,639 effective search space: 9823486689 effective search space used: 9823486689 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)