BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZC06RM1.SCF screened BAC_end
(967 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1469 1231 0.0
>3x_Contig1469
Length = 9240
Score = 1231 bits (621), Expect = 0.0
Identities = 718/746 (96%), Gaps = 4/746 (0%)
Strand = Plus / Minus
Query: 48 ttcactttctatgtaatggattctatctgtaagaacgctggttctccgtatacgatctat 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6376 ttcactttctatgtaatggattctatctgtaagaacgctggttctccgtatacgatctat 6317
Query: 108 ttctctaagaatttgcataaattgttccgtaaaacttatttacttgtggataatcagact 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6316 ttctctaagaatttgcataaattgttccgtaaaacttatttacttgtggataatcagact 6257
Query: 168 agaaccaagatgatttcaatgttcaaaacgtggatggtgccattgcctgcatgagacttg 227
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 6256 agaaccaagatgatttcaatgttcaaaacgtggatggtgccattgcctgcaggagacttg 6197
Query: 228 atgttcgatcatagttctttgaacagcatcgagaattttttgattaaagctagtgcgttg 287
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 6196 atgttcgatcatagttctttgaacagcatcgagaattttttgattaaggctagtgcgttg 6137
Query: 288 catcagaaaagtgctactccgccggcgatacaacaacataccgctcacaacggaccggct 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6136 catcagaaaagtgctactccgccggcgatacaacaacataccgctcacaacggaccggct 6077
Query: 348 gggtcgaatattactgtgaaatcgttactgtcggatattgataaattagcgctgattacg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6076 gggtcgaatattactgtgaaatcgttactgtcggatattgataaattagcgctgattacg 6017
Query: 408 cagtcgaagctagtaagtacaccggatgacgccaagttgcaggcaaaagtagcgatattg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6016 cagtcgaagctagtaagtacaccggatgacgccaagttgcaggcaaaagtagcgatattg 5957
Query: 468 aagcagttgagacaagagttgcagaaggaacggttggcaccggagtttttgtcgcaagtt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5956 aagcagttgagacaagagttgcagaaggaacggttggcaccggagtttttgtcgcaagtt 5897
Query: 528 catcagcagctcaaacagatttttgcgcaagatcatcaacagcatcaatcacaacagcag 587
|||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||
Sbjct: 5896 catcagcagctcaaacagatttttgcgcaagaacatcaacagcaacaacaacaacagcag 5837
Query: 588 cagcagcagttgccattacaaaataactctcagtttctgccgncatcatctcaaagttct 647
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 5836 cagcagcagttgccattacaaaataactctcagtttctgccgccatcatctcaaggttct 5777
Query: 648 gt-aacaatgatatgtctcgtggctcactccaagcgaaccgtaacaacaggctcgatgtt 706
|| ||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||
Sbjct: 5776 gtaaacaatgatatgtctcgtggctcactccaggcgaacggtaacaac-ggctcgatgtt 5718
Query: 707 ccgaagaagccctcaatttaaatgctccatttnttgaccaactggacaactttaaccgnt 766
| || |||||| ||||||| |||||||||||| | |||||||| ||||| ||||||
Sbjct: 5717 cggaggaagccttcaattt-aatgctccatttttgaaccaactgaccaactctaaccgtc 5659
Query: 767 ctaataagcttttctattttggttaa 792
||||||| |||||| |||||||||
Sbjct: 5658 tcaataagc-tttctagtttggttaa 5634
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7509
Number of Sequences: 1807
Number of extensions: 7509
Number of successful extensions: 222
Number of sequences better than 1.0e-20: 1
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)