BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZC07FM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig390 1556 0.0
>3x_Contig390
Length = 1860
Score = 1556 bits (785), Expect = 0.0
Identities = 823/835 (98%), Gaps = 1/835 (0%)
Strand = Plus / Minus
Query: 87 tacgggagcgaatttatcgaacactcgtacatgtaccatctcacgagaacagaccacaga 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1657 tacgggagcgaatttatcgaacactcgtacatgtaccatctcacgagaacagaccacaga 1598
Query: 147 cacaatttttcgatttggaacctggtcttactcttagaatctgctggtattcatctttcc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1597 cacaatttttcgatttggaacctggtcttactcttagaatctgctggtattcatctttcc 1538
Query: 207 caatctatcgatttatctaagctggcattcgttcctcaattgacactatgtgcagtacta 266
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1537 caatctatcgaactatctaagctggcattcgttcctcaattgacactatgtgcagtacta 1478
Query: 267 ccttatctattgtggaaatcacagacgttcgaaaatttaatgaatgtcctattcgtacaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1477 ccttatctattgtggaaatcacagacgttcgaaaatttaatgaatgtcctattcgtacaa 1418
Query: 327 acatacgcattcgttactttcaataaagtatgcacttctcaatatttcatttggtatttg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1417 acatacgcattcgttactttcaataaagtatgcacttctcaatatttcatttggtatttg 1358
Query: 387 gtattatccccattttatttcgcaaatacaaccattacatggagaaaaggtgtggtctgt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1357 gtattatccccattttatttcgcaaatacaaccattacatggagaaaaggtgtggtctgt 1298
Query: 447 atatttttatggatattgtctcaagccgtatggctttcacaagcatatctacttgaattc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1297 atatttttatggatattgtctcaagccgtatggctttcacaagcatatctacttgaattc 1238
Query: 507 aaaggccaaaatgtatttttccccaacttattctttggcaatatagtgtttttcctcatc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1237 aaaggccaaaatgtatttttccccaacttattctttggcaatatagtgtttttcctcatc 1178
Query: 567 aacgtctatctactcggtgtctttatcactgacatcaaatccagaacgtcattccaagac 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1177 aacgtctatctactcggtgtctttatcactgacatcaaatccagaacgtcattccaagac 1118
Query: 627 aatcaacataagaagaatatataattttaacttagcatatactgtagcgtactgtgacat 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1117 aatcaacataagaagaatatataattttaacttagcatatactgtagcgtactgtgacat 1058
Query: 687 tttcaaagccacgatcgaagtcctgacgagtattttgatgttccattccgttcatccaat 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057 tttcaaagccacgatcgaagtcctgacgagtattttgatgttccattccgttcatccaat 998
Query: 747 ttcatatccgttgtcagattcactcgctgctggtntcttcatactgattatttgaataga 806
|||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||
Sbjct: 997 ttcatatccgttgtcagattcactcgctgctgttttcttcatactgattattgaaataga 938
Query: 807 atttg-anaaaaaaaagtattcagtttttgaatcttacaagtgaaatatgagctcatcga 865
||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 937 atttgaaaaaaaaaaagtattcaagttttgaatcttacaagtgaaatatgagctcatcga 878
Query: 866 catctactagaagaagtacattcaaagcggaggctgtcagaatgaaattagcccc 920
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 877 catctactagaagaagtacattcaaagcagaggctgtcagattgaaattagcccc 823
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6818
Number of Sequences: 1807
Number of extensions: 6818
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)