BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZC07RM1.SCF screened BAC_end
(865 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1717 973 0.0
>3x_Contig1717
Length = 18389
Score = 973 bits (491), Expect = 0.0
Identities = 533/543 (98%), Gaps = 3/543 (0%)
Strand = Plus / Minus
Query: 47 ctcttgagccacttgaaaatgatatataatgcacactggaccagatacaaagataatttg 106
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3427 ctcttgagc-acttgaaaatgatatataatgcacactggaccagatacaaagataatttg 3369
Query: 107 tttcttcttcaagctaattttgtgattgagaaagaagacactcataaaatatggtgcata 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3368 tttcttcttcaagctaattttgtgattgagaaagaagacactcataaaatatggtgcata 3309
Query: 167 atatatatctcttattatttcaatgtgatgttcaaaaagaaaaacgcctaaataatgcaa 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3308 atatatatctcttattatttcaatgtgatgttcaaaaagaaaaacgcctaaataatgcaa 3249
Query: 227 tatgcgttttatctctgcgaaaacctgaaaaattcactgcgaacg-aaacggaacctaaa 285
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 3248 tatgcgttttatctctgcgaaaacctgaaaaattcactgcgaacgcaaacggaacctaaa 3189
Query: 286 tacattgagatcagccaaaaaaaaaaagaaaaatttgggtgaaagaatcacttcgtttag 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3188 tacattgagatcagccaaaaaaaaaaagaaaaatttgggtgaaagaatcacttcgtttag 3129
Query: 346 cgaaacaacatacgtatacgagaaatatgaaattcgatacataaataaatgataagaatc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3128 cgaaacaacatacgtatacgagaaatatgaaattcgatacataaataaatgataagaatc 3069
Query: 406 gtctattctgctgctgcaagacgtacacacgtatatgacatcaaatgatcatggtctgaa 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3068 gtctattctgctgctgcaagacgtacacacgtatatgacatcaaatgatcatggtctgaa 3009
Query: 466 tgcaccgtacgcatctcctgctagtacgttgacagtgttctctatcaa-tctaactggct 524
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 3008 tgcaccgtacgcatctcctgctagtacgttgacagtgttctctatcaattctaactggct 2949
Query: 525 ggcgtctaaatttagcatttcttggcccatcttcgttaatgattccctgggggaatctac 584
| ||||||||| |||||||||||| | ||||||||||||||||||| ||||| | |||||
Sbjct: 2948 gtcgtctaaatctagcatttcttgacacatcttcgttaatgattccttggggaattctac 2889
Query: 585 caa 587
|||
Sbjct: 2888 caa 2886
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,345
Number of Sequences: 1807
Number of extensions: 14345
Number of successful extensions: 238
Number of sequences better than 1.0e-20: 1
length of query: 865
length of database: 10,358,551
effective HSP length: 16
effective length of query: 849
effective length of database: 10,329,639
effective search space: 8769863511
effective search space used: 8769863511
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)