BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC9ZC08FM1.SCF screened BAC_end (928 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1602 450 e-126 >3x_Contig1602 Length = 12694 Score = 450 bits (227), Expect = e-126 Identities = 278/293 (94%), Gaps = 3/293 (1%) Strand = Plus / Plus Query: 626 tgacaatactttcaatgtaaccaatcctgcgagtaagctgccgaacacgtacgtgacaaa 685 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tgacaatactttcaatgta-ccaatcctgcgagtaagctgccgaacacgtacgtgacaaa 59 Query: 686 atcagccagcttcattgtttgtatatcaattgaaaagtagcccaggacacgcggctgact 745 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 60 atcagccagcttcattgtttgtatatcaattgaaaagtagcccaggacacgcggctgact 119 Query: 746 tgtttaactcgtaactaacgttcgcttatatatttatatcangacattaagggcagattt 805 |||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||| Sbjct: 120 tgtttaactcgtaactaacgttcgctaatatatttatatcaggacattaaggcaagattt 179 Query: 806 tcatatattgtacctcatctttttatgtgt-aaattagatngttcacaatctgagtttcc 864 ||||||||||||||||||| |||||||||| |||| |||| ||||||||||||||||||| Sbjct: 180 tcatatattgtacctcatc-ttttatgtgtaaaataagattgttcacaatctgagtttcc 238 Query: 865 ttatcgntgaaactgaacccgnantatccgcatagacacgacanatcttaaaa 917 |||||| |||||||||||| | ||||||||||||||||||| ||||||||| Sbjct: 239 ttatcgttgaaactgaaccggagttatccgcatagacacgacagatcttaaaa 291 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5973 Number of Sequences: 1807 Number of extensions: 5973 Number of successful extensions: 50 Number of sequences better than 1.0e-20: 1 length of query: 928 length of database: 10,358,551 effective HSP length: 16 effective length of query: 912 effective length of database: 10,329,639 effective search space: 9420630768 effective search space used: 9420630768 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)