BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZC08RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1420 1336 0.0
>3x_Contig1420
Length = 8324
Score = 1336 bits (674), Expect = 0.0
Identities = 755/774 (97%), Gaps = 6/774 (0%)
Strand = Plus / Plus
Query: 46 ttacaccatcgtaaaagaggaaggtttcagcgctttgtaccgtggtgtttcattgactgc 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2745 ttacaccatcgtaaaagaggaaggtttcagcgctttgtaccgtggtgtttcattgactgc 2804
Query: 106 tgctagacaagccaccaaccaaggtgctaatttcaccgtttactctaaattaaaagaatt 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2805 tgctagacaagccaccaaccaaggtgctaatttcaccgtttactctaaattaaaagaatt 2864
Query: 166 cttgcaaggttatcataatcaagaaatgttgccaagttgggaaacctcattgattgggtt 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2865 cttgcaaggttatcataatcaagaaatgttgccaagttgggaaacctcattgattgggtt 2924
Query: 226 aatctcaggtgccattggtcccttctcaaatgcaccgttagataccatcaagacgagatt 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2925 aatctcaggtgccattggtcccttctcaaatgcaccgttagataccatcaagacgagatt 2984
Query: 286 gcaaaaggataaatctactaagaatatgtccggtctcaaaagaattaccatcattggtaa 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2985 gcaaaaggataaatctactaagaatatgtccggtctcaaaagaattaccatcattggtaa 3044
Query: 346 acaattgatccaagaagaaggtttccgtgccctatataaaggtatcaccccaagagtgat 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3045 acaattgatccaagaagaaggtttccgtgccctatataaaggtatcaccccaagagtgat 3104
Query: 406 gcgtgtggctccaggtcaagctgtcactttcactgcttatgaattcattcgtaaagaatt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3105 gcgtgtggctccaggtcaagctgtcactttcactgcttatgaattcattcgtaaagaatt 3164
Query: 466 ggagaagaccggtgtattttgaatcgatctaatttatggttctcaccatcatttcttttc 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3165 ggagaagaccggtgtattttgaatcgatctaatttatggttctcaccatcatttcttttc 3224
Query: 526 cttc-atcatgctcctactaccatttctccctctctcattcaagacttctcaatcataat 584
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3225 cttcaatcatgctcctactaccatttctccctctctcattcaagacttctcaatcataat 3284
Query: 585 tatagattttgattattgcattagaattttgatatattcataaaggtgtttttcacaaac 644
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 3285 tatagattttgattattgcattagaattttgatatattcataaaggtgttttccacaaac 3344
Query: 645 taagagaatggttaaagagacaaaacttcttgaagtatttcaagaagaact-aaaatatt 703
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 3345 taagagaatggttaaagagacaaaacttcttgaagtatttcaagaagaactaaaaatatt 3404
Query: 704 tccacgcatcattatcgttctttctgttaacccattgaacatttcacccattaaaattca 763
||||||||||||| |||| ||||||||| ||| |||||| |||||||| |||||||||
Sbjct: 3405 cccacgcatcatta-cgtttcttctgttaaaccaatgaacaattcacccaataaaattca 3463
Query: 764 gatttatttatgagaccccatttgaaagataccccaaaatgttattgagatgct 817
|| ||| |||||||| | || |||||||||| | |||||||||| |||||||||
Sbjct: 3464 ga-ttaattatgaga-cgcagttgaaagataacacaaaatgtta-tgagatgct 3514
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,461
Number of Sequences: 1807
Number of extensions: 16461
Number of successful extensions: 554
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)