BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZC09FM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1574 1574 0.0
>3x_Contig1574
Length = 8021
Score = 1574 bits (794), Expect = 0.0
Identities = 833/843 (98%), Gaps = 4/843 (0%)
Strand = Plus / Plus
Query: 86 agccacttaaacacgactttccatagatgcatcttagaggataaggcgaacagcataaat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3819 agccacttaaacacgactttccatagatgcatcttagaggataaggcgaacagcataaat 3878
Query: 146 gatttaatcgctgggaaattcactaagctaacgtttgtacctcctgatggacgtactagg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3879 gatttaatcgctgggaaattcactaagctaacgtttgtacctcctgatggacgtactagg 3938
Query: 206 ctctgtcaatatatccctaccgttggtgaaaagagactcaaacctcggcattatagacgt 265
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3939 ctctgtcaatata-ccctaccgttggtgaaaagagactcaaacctcggcattatagacgt 3997
Query: 266 aaatttacaaagcagtttaggtaaaagacttgacgaatttgaggtccgcgtcaccgttgg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3998 aaatttacaaagcagtttaggtaaaagacttgacgaatttgaggtccgcgtcaccgttgg 4057
Query: 326 aatgagcacgacggtgaaagaaatagaaaacatgagcatgactatcaggatgaatagaaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4058 aatgagcacgacggtgaaagaaatagaaaacatgagcatgactatcaggatgaatagaaa 4117
Query: 386 ttttaagggaatagtacgtgtcatgagaaacactcacggcggtgtcgaaacaaatatgac 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4118 ttttaagggaatagtacgtgtcatgagaaacactcacggcggtgtcgaaacaaatatgac 4177
Query: 446 tcgtggcgaagttaattggcatttggacaaaaacatggtatgcggttcaatggctgtact 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4178 tcgtggcgaagttaattggcatttggacaaaaacatggtatgcggttcaatggctgtact 4237
Query: 506 acgttgtatagcggaactggaacccgaactcgcctccaatgaccaaacatctagtagatc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4238 acgttgtatagcggaactggaacccgaactcgcctccaatgaccaaacatctagtagatc 4297
Query: 566 ttcggttgttcaaccacctagttcacacttaacatccttactacaacctagtttcatcaa 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4298 ttcggttgttcaaccacctagttcacacttaacatccttactacaacctagtttcatcaa 4357
Query: 626 atgttactacgaacacaaatcccagcttccctccggaatcaaacttcaatcaatcgacgt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4358 atgttactacgaacacaaatcccagcttccctccggaatcaaacttcaatcaatcgacgt 4417
Query: 686 agttaatggaggtccaaaaaaaccgttcaaaggtgttaagtacctcacaaagactggttc 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4418 agttaatggaggtccaaaaaaaccgttcaaaggtgttaagtacctcacaaagactggttc 4477
Query: 746 gctagagtataggtgatgatacgttaaatggnttatatatatgtatgtatgtatttatgt 805
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 4478 gctagagtataggtgatgatacgttaaatggtttatatatatgtatgtatgtatttatgt 4537
Query: 806 atgtgtttggatcacgtgatatttttgttttatgtacttttcgaacgagnaaaaagtgtt 865
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 4538 atgtgtttggatcacgtgatatttttgttttatgtacttttcgaacgaggaaaaagtgtt 4597
Query: 866 ccaactgattaaagacttaaagggggaat-agtagaccacccttggataacagatgtttt 924
||||||||||||||||||||| ||||| |||||| | ||||||||||||||||||||
Sbjct: 4598 ccaactgattaaagacttaaa--aggaataagtagagccaccttggataacagatgtttt 4655
Query: 925 aaa 927
|||
Sbjct: 4656 aaa 4658
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5797
Number of Sequences: 1807
Number of extensions: 5797
Number of successful extensions: 87
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)