BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZC09RM1.SCF screened BAC_end
(967 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1599 1170 0.0
>3x_Contig1599
Length = 10178
Score = 1170 bits (590), Expect = 0.0
Identities = 639/653 (97%), Gaps = 2/653 (0%)
Strand = Plus / Plus
Query: 48 ttttccgtatttcgaatttttttttttcattttctaccgacatgaagaccgaaaaaaagg 107
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 6657 ttttccgtatttcgaatttttttttttcagtttctaccgacatgaagaccgaaaaaaagg 6716
Query: 108 cattcgcttattcagtcacacaatcaagccgtcaccctaatcactgactaaacgagtcca 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6717 cattcgcttattcagtcacacaatcaagccgtcaccctaatcactgactaaacgagtcca 6776
Query: 168 ttgtccggaattacgatgaatatttgaaaaccgctggtaacggttctggttgagacgatg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6777 ttgtccggaattacgatgaatatttgaaaaccgctggtaacggttctggttgagacgatg 6836
Query: 228 cataaagtgcatcgattctacctgcaagagatacgatctatgtcaaagtgttggcttctc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6837 cataaagtgcatcgattctacctgcaagagatacgatctatgtcaaagtgttggcttctc 6896
Query: 288 caatattgaactatatactgctctataaaatgtatgcctagcatctatcatattatcaat 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6897 caatattgaactatatactgctctataaaatgtatgcctagcatctatcatattatcaat 6956
Query: 348 gcaatagctgcacccaggtaaaccaagttgcttgatgaaccaaactgattcatgtccctg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6957 gcaatagctgcacccaggtaaaccaagttgcttgatgaaccaaactgattcatgtccctg 7016
Query: 408 ttcatattgaaagcacctccgttagtgctatttacgtaagcagttgtctgtgttgacgaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7017 ttcatattgaaagcacctccgttagtgctatttacgtaagcagttgtctgtgttgacgaa 7076
Query: 468 gcgctgcttgccgattgtgacagagtagctgtcgtcg-accagtctcagtaagggaagac 526
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 7077 gcgctgcttgccgattgtgacagagtagctgtcgtcgaaccagtctcagtaagggaagac 7136
Query: 527 gatgggag-caccaaatcttagatgtatacgttttcactgcggaatttgtggtggtgagt 585
|| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 7137 gaggggagccaccaaatcttagatgtatacgtttcacctgcggaatttgtggtggtgagt 7196
Query: 586 ataggtattgggtcatcgtagtttctatttgacgtggccagcgtattgtctactgaaact 645
|||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 7197 atagttattggttcatcgtagtttctagttgacgtggccagcgtattgtctactgaaact 7256
Query: 646 gtattgctgnctgaagtctttgcccatacacctgcttgggaagtcacgtgatt 698
||||||||| |||| |||| ||||||||||| |||||||||||||||||||||
Sbjct: 7257 gtattgctggctgaggtctctgcccatacacttgcttgggaagtcacgtgatt 7309
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,475
Number of Sequences: 1807
Number of extensions: 11475
Number of successful extensions: 101
Number of sequences better than 1.0e-20: 1
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)