BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZC10FM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1540 1542 0.0
>3x_Contig1540
Length = 9505
Score = 1542 bits (778), Expect = 0.0
Identities = 825/837 (98%), Gaps = 3/837 (0%)
Strand = Plus / Minus
Query: 87 ttacaaaggcgttccaagagcgtagagcagcagttgatgatgagacattagataaattca 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5944 ttacaaaggcgttccaagagcgtagagcagcagttgatgatgagacattagataaattca 5885
Query: 147 tgaaaccacacaaactagtttggggccaacaagaaagactggtcccagtcaaaccaaagg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5884 tgaaaccacacaaactagtttggggccaacaagaaagactggtcccagtcaaaccaaagg 5825
Query: 207 aagataagaatattatcactgaagcctgaaagattgatcacttagcatgagtaccgaacg 266
|||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5824 aagataagaagaagaacactgaagcctgaaagattgatcacttagcatgagtaccgaacg 5765
Query: 267 cttgccttgaaatttaacccattaaaggttgccatatttgttagtgcagatataaatatt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5764 cttgccttgaaatttaacccattaaaggttgccatatttgttagtgcagatataaatatt 5705
Query: 327 gactcttagctgaaggtatgcgtaaagagaaggaaagaagcaaaggcatttctatataca 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5704 gactcttagctgaaggtatgcgtaaagagaaggaaagaagcaaaggcatttctatataca 5645
Query: 387 gagtaataagtatcttttatctctagtatttaattcgtttttgtatcatttgttaaagtc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5644 gagtaataagtatcttttatctctagtatttaattcgtttttgtatcatttgttaaagtc 5585
Query: 447 attatagattataattcagagccggccagatgtttgatagtataatcgaagataaaggtc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5584 attatagattataattcagagccggccagatgtttgatagtataatcgaagataaaggtc 5525
Query: 507 gaacagtaaaaccaacaggccgagattattatgttactggaacagaaattattgtattca 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5524 gaacagtaaaaccaacaggccgagattattatgttactggaacagaaattattgtattca 5465
Query: 567 ttgatgcttttgaatgtaatccaccaaagcttcaagtgtaataattgaaatatcgaattc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5464 ttgatgcttttgaatgtaatccaccaaagcttcaagtgtaataattgaaatatcgaattc 5405
Query: 627 tttgccaaattcgacacagtcatccaatctcatcatatctccatcttcatctttgacgag 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5404 tttgccaaattcgacacagtcatccaatctcatcatatctccatcttcatctttgacgag 5345
Query: 687 ttcaccaatgacaccgactggtgggagtgatgcaagcttgcataggtcgacagctgcttc 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5344 ttcaccaatgacaccgactggtgggagtgatgcaagcttgcataggtcgacagctgcttc 5285
Query: 747 agtgtgaccacgtctggccagaacaccgccttctttggctcttaatggcaccacatgacc 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5284 agtgtgaccacgtctggccagaacaccgccttctttggctcttaatggcaccacatgacc 5225
Query: 807 agnctttaagtaatcaatagcggtagtagtcttgtcagcaagtttgg-acacgttaatgc 865
|| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 5224 aggcttcaagtaatcaatagcggtagtagtcttgtcagcaagtttggaacacgttaatgc 5165
Query: 866 acgaatcatgtgctg-aatccttgttgttggtccgtgtgcataatcacaagtaatgg 921
||| ||||||||||| ||||| |||||| | ||||||||||||||||||||||||||
Sbjct: 5164 acg-atcatgtgctgaaatccctgttgtggttccgtgtgcataatcacaagtaatgg 5109
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6582
Number of Sequences: 1807
Number of extensions: 6582
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)