BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZC10RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1027 928 0.0
>3x_Contig1027
Length = 4522
Score = 928 bits (468), Expect = 0.0
Identities = 545/563 (96%), Gaps = 7/563 (1%)
Strand = Plus / Plus
Query: 49 tgcttcaatgtcaacattgtaacattcaggaagctctgagttctcc-taagtctgtttgt 107
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 3846 tgcttcaatgtcaacattgtaacattcaggaagctctgagttctccataagtctgtttgt 3905
Query: 108 tataccgttttccatctgtgttctgatcctttgagcatccaactcctggaatacttttat 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3906 tataccgttttccatctgtgttctgatcctttgagcatccaactcctggaatacttttat 3965
Query: 168 ttcattttcgtttctcgccaagatttcattgagttcgttatcatccaactgctcttcttc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3966 ttcattttcgtttctcgccaagatttcattgagttcgttatcatccaactgctcttcttc 4025
Query: 228 ttcaatgcctaactcacgtcttttcttttcctcttcctcagcttctagtaacgatctcaa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4026 ttcaatgcctaactcacgtcttttcttttcctcttcctcagcttctagtaacgatctcaa 4085
Query: 288 taatgcctcttgttcttcagctgttgatttgttatcaaacttacctgcttgaataacttt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4086 taatgcctcttgttcttcagctgttgatttgttatcaaacttacctgcttgaataacttt 4145
Query: 348 tccgtcaatgtccaatttggcatgcgccttatcaagaattgcttcttccactgaattgtc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4146 tccgtcaatgtccaatttggcatgcgccttatcaagaattgcttcttccactgaattgtc 4205
Query: 408 tgtaattaatctaagaatacgcacttcattcttttgaccgattctatgagctctgtcttg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4206 tgtaattaatctaagaatacgcacttcattcttttgaccgattctatgagctctgtcttg 4265
Query: 468 ggcctgtaaatcctgttgaggatt-caatcagtatc-aaaatgataccgg-atctgcagt 524
||||||||||||||| |||||||| ||||||||||| ||||||||| ||| |||||||||
Sbjct: 4266 ggcctgtaaatcctggtgaggattccaatcagtatcaaaaatgataacggtatctgcagt 4325
Query: 525 ttgccaatttaaacctaaa-caccagcttttggggataaaaggaacc--gaattatccga 581
|||| |||||||||||||| |||||||| ||| ||||||||||| | ||| ||| ||
Sbjct: 4326 ttgcaaatttaaacctaaaccaccagctcttgtagataaaaggaaacagaaataatcaga 4385
Query: 582 gtttggggcattgaaagggttta 604
||||||||||||||||| |||||
Sbjct: 4386 gtttggggcattgaaagtgttta 4408
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9223
Number of Sequences: 1807
Number of extensions: 9223
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)