BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC9ZC11FM1.SCF screened BAC_end
         (932 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1063                                                        1586   0.0  

>3x_Contig1063 
          Length = 5012

 Score = 1586 bits (800), Expect = 0.0
 Identities = 839/849 (98%), Gaps = 3/849 (0%)
 Strand = Plus / Plus

                                                                        
Query: 86   tactcaaagataaacagccgctagttatacaattaaactatttggttaccaactggaatt 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3474 tactcaaagataaacagccgctagttatacaattaaactatttggttaccaactggaatt 3533

                                                                        
Query: 146  ctttgcagtctccggagtatataattagggacacggtacagaagaatctgatgtcaaaac 205
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 3534 ctttgcagtctccggagtatataaatagggacacggtacagaagaatctgatgtcaaaac 3593

                                                                        
Query: 206  tctctgattgaaataaatacacagtagcgaataatatgagttactcatcatattcatcga 265
            ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3594 tctctgattgaaaaaaaaacacagtagcgaataatatgagttactcatcatattcatcga 3653

                                                                        
Query: 266  aatggtcattacagaagagggaaactacattatacacacgttaatattcactcactcctt 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3654 aatggtcattacagaagagggaaactacattatacacacgttaatattcactcactcctt 3713

                                                                        
Query: 326  gacgaagactgcagcagctcccataccagtaccgatacacatgctaacaacaccaatttg 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3714 gacgaagactgcagcagctcccataccagtaccgatacacatgctaacaacaccaatttg 3773

                                                                        
Query: 386  accagcgtctaattcccttaatatggtagcgacttgtctggcaccagtgcagcccaaagg 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3774 accagcgtctaattcccttaatatggtagcgacttgtctggcaccagtgcagcccaaagg 3833

                                                                        
Query: 446  atgacctaaggcaatcgcgcctccccttgggttcaatttcttcttgtcgatttttagatg 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3834 atgacctaaggcaatcgcgcctccccttgggttcaatttcttcttgtcgatttttagatg 3893

                                                                        
Query: 506  gttgacacagaaaatggcctgccctgcaaaggcctcattaatctcgtaaacatcaacatc 565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3894 gttgacacagaaaatggcctgccctgcaaaggcctcattaatctcgtaaacatcaacatc 3953

                                                                        
Query: 566  gttgacatttaaaccacagtctttgaggactcttggaatcgcatatgctgggccaacacc 625
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3954 gttgacatttaaaccacagtctttgaggactcttggaatcgcatatgctgggccaacacc 4013

                                                                        
Query: 626  catgatctcaggtggaacacctactgcctggaacgcaacgtacttaccaacgatttccaa 685
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4014 catgatctcaggtggaacacctactgcctggaacgcaacgtacttaccaacgatttccaa 4073

                                                                        
Query: 686  acccaatttcatggccatggatcttctcattagcaacacaccagcaacaccatctgatat 745
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4074 acccaatttcatggccatggatcttctcattagcaacacaccagcaacaccatctgatat 4133

                                                                        
Query: 746  ctgagaagcgttaccggcagttgtcacacctgtttccttcacaaatgcaggtttaatctt 805
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4134 ctgagaagcgttaccggcagttgtcacacctgtttccttcacaaatgcaggtttaatctt 4193

                                                                        
Query: 806  ttgtaacgattcgaaagtgacgccctttctaggaccttcgtnctgcgc-attatagatcc 864
            ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 4194 ttgtaacgattcgaaagtgacgccctttctaggaccttcgtcctgcgcaattatagatcc 4253

                                                                        
Query: 865  gtctggtagttcaatagggatgatttcatctttaaacaat-cctgggagaca-ncctttn 922
            |||||||||||||||||||||||||||||||||||||||| |||| ||||||  ||||| 
Sbjct: 4254 gtctggtagttcaatagggatgatttcatctttaaacaatccctgtgagacagccctttc 4313

                     
Query: 923  cgctttata 931
            |||||||||
Sbjct: 4314 cgctttata 4322


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5523
Number of Sequences: 1807
Number of extensions: 5523
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)