BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZC11RM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig917 1409 0.0
>3x_Contig917
Length = 3433
Score = 1409 bits (711), Expect = 0.0
Identities = 808/833 (96%), Gaps = 6/833 (0%)
Strand = Plus / Plus
Query: 48 tatattatcttaacgatactttgtcaacctaatttgcttggctttgatttaacccattag 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2398 tatattatcttaacgatactttgtcaacctaatttgcttggctttgatttaacccattag 2457
Query: 108 cttccatttgacatatgatagtgttgatggtgttttaatcaattaaagtctctgttacaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2458 cttccatttgacatatgatagtgttgatggtgttttaatcaattaaagtctctgttacaa 2517
Query: 168 acgcttatatccgcaattgccaacaataatataaggaaaaggtttatttattctcgattt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2518 acgcttatatccgcaattgccaacaataatataaggaaaaggtttatttattctcgattt 2577
Query: 228 gatacccataagatcaacatctcttttctttccaagacaccatcgtacaaactaagcgat 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2578 gatacccataagatcaacatctcttttctttccaagacaccatcgtacaaactaagcgat 2637
Query: 288 catctttctgtttatattcttgcactgttcttcctttcatattggaaaacctatgatgac 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2638 catctttctgtttatattcttgcactgttcttcctttcatattggaaaacctatgatgac 2697
Query: 348 atacaacttatgtgatgcaaaaacaaagtataattacaacgataatagtcacgaaaagaa 407
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2698 atacaacttaggtgatgcaaaaacaaagtataattacaacgataatagtcacgaaaagaa 2757
Query: 408 actgatgcggagggattccgtacctctagatgtatttgcatcgatgatgaacgaatcgag 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2758 actgatgcggagggattccgtacctctagatgtatttgcatcgatgatgaacgaatcgag 2817
Query: 468 tcttccctcgacgaatccggcactggagatgtataaactgaccaaaccgtctttgaaatt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2818 tcttccctcgacgaatccggcactggagatgtataaactgaccaaaccgtctttgaaatt 2877
Query: 528 tcacttctctacttttgcgtcagtattctctgcgcctgcctgtgtccccgatgatggcgg 587
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2878 tcacttctctacttttgcgtcagtattctctgcgcctgcctgggtccccgatgatggcgg 2937
Query: 588 gcctgatatgccttatgatgataaatctcaatatcatcatcattcatc-aaataaccaca 646
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 2938 gcctgatatgccttatgatgataaatctcaatatcatcatca-tcatcaaaataaccaca 2996
Query: 647 atcattaccacaatcatcatcacaatcatacngatacatgtgtangtgctggcaccgatc 706
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 2997 atcattaccacaatcatcatcacaatcatacggatacatgtgtaggtgctggcaccgatc 3056
Query: 707 ataacagtgacgaatctgtcgctgcgtccctat-ggaccccaactacgaaaa-caatttg 764
||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||
Sbjct: 3057 ataacagtgacgaatctgtcgctgcgtccctatgggacccaaactacgaaaaccaatttg 3116
Query: 765 gaaacgtatggcaaacc-atcacattgcctattctcttaacc-acattatccttagaaca 822
||||||||||||||||| |||||||||||||| ||||||||| |||||| ||| ||||||
Sbjct: 3117 gaaacgtatggcaaaccaatcacattgcctatcctcttaaccaacattaccctcagaaca 3176
Query: 823 taacgaagctttattttaagcgttcgtcgcaaattaccgagcttcaaccagtc 875
|| || ||| || | | ||||| ||||||||| || ||||||||||| ||||
Sbjct: 3177 taccgcagccttcatctcagcgtccgtcgcaaagtagcgagcttcaacaagtc 3229
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6788
Number of Sequences: 1807
Number of extensions: 6788
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)