BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZC12FM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1660 1530 0.0
>3x_Contig1660
Length = 13166
Score = 1530 bits (772), Expect = 0.0
Identities = 830/842 (98%), Gaps = 6/842 (0%)
Strand = Plus / Plus
Query: 86 atcgtttgaacaattcaaagaagtgttcagttcgtttgaaaaagtgaaccataacgaagt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11061 atcgtttgaacaattcaaagaagtgttcagttcgtttgaaaaagtgaaccataacgaagt 11120
Query: 146 catcaagatggaaaacgatttattgaagttaaagacgctccatttgaacaatctaataga 205
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 11121 catcaagatggaaaacgatttaaagaagttaaagacgctccatttgaacaatctaataga 11180
Query: 206 tt-acaatggatcn-ataaaattgtgtcaccaacggtataatgagtatgggacacgagga 263
|| |||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11181 tttacaatggaacttacaaaattgtgtcaccaacggtataatgagtatgggacacgagga 11240
Query: 264 tacgaaccgggtattactagcacaagatgaattagacatgacaatcaattttgtcagaaa 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11241 tacgaaccgggtattactagcacaagatgaattagacatgacaatcaattttgtcagaaa 11300
Query: 324 tgccatggacaattaattaaagataaaatagttttagtacaataatctgatgacacacac 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11301 tgccatggacaattaattaaagataaaatagttttagtacaataatctgatgacacacac 11360
Query: 384 agaaaagggttttctttcgattaaacatgatacatataataagtcagatacaagtatata 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11361 agaaaagggttttctttcgattaaacatgatacatataataagtcagatacaagtatata 11420
Query: 444 catatttatacatatcgacacatgtaaaaatcgcatagaaagaggattgagaaatgggaa 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11421 catatttatacatatcgacacatgtaaaaatcgcatagaaagaggattgagaaatgggaa 11480
Query: 504 catcaaagtacagcaaaacaataggatattaagaaacatagtagacctctccaaaagaaa 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11481 catcaaagtacagcaaaacaataggatattaagaaacatagtagacctctccaaaagaaa 11540
Query: 564 cacacacaaaataagaataattcatggaaaaaccacgaattaaaccacacttttattaag 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11541 cacacacaaaataagaataattcatggaaaaaccacgaattaaaccacacttttattaag 11600
Query: 624 agagacctccaatgcaactaacagataaccccaggttgctaaaccagacccaagtctcat 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11601 agagacctccaatgcaactaacagataaccccaggttgctaaaccagacccaagtctcat 11660
Query: 684 aacaaaaaaaaaactttatttttttttggtagaatctctccctcaaaagaaaacagagag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11661 aacaaaaaaaaaactttatttttttttggtagaatctctccctcaaaagaaaacagagag 11720
Query: 744 ggtagagacgacacacagcacgagttacacgacgacacgacacgacacttcacactaaat 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11721 ggtagagacgacacacagcacgagttacacgacgacacgacacgacacttcacactaaat 11780
Query: 804 cataactcaatataaaaacacaacggttgataatnaaagtcttcaggattgaaac-aaaa 862
||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||
Sbjct: 11781 cataactcaatataaaaacac-acggttgataataaaagtcttcaggattgaaacaaaaa 11839
Query: 863 aaaaacagaacagcccaattaacaatttcaactgtttcagaagagtttc-aagaaaaatt 921
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 11840 aaaaacagaacagcccaattaacaatttcaactg-ttcagaagagtttcaaagaaaaatt 11898
Query: 922 ta 923
||
Sbjct: 11899 ta 11900
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,122
Number of Sequences: 1807
Number of extensions: 10122
Number of successful extensions: 104
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)