BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZC12RM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1503 1168 0.0
>3x_Contig1503
Length = 10719
Score = 1168 bits (589), Expect = 0.0
Identities = 703/725 (96%), Gaps = 12/725 (1%)
Strand = Plus / Plus
Query: 44 gcttatatatttcacatttgttaacctgatttgacaatattgaattttcgttacccggat 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6876 gcttatatatttcacatttgttaacctgatttgacaatattgaattttcgttacccggat 6935
Query: 104 ttgcgactggcatctaattatttgaagagattccaaggtaagacaaacaacaagcactgg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6936 ttgcgactggcatctaattatttgaagagattccaaggtaagacaaacaacaagcactgg 6995
Query: 164 taaaagttactatctcacagtcattagcttattattattgatgcagtatacttactgttg 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 6996 taaaagttactatctcacagtcattagcttattattattgatgcagtatacttacggttg 7055
Query: 224 agcataggataaaatacaatctctatgcaatgctatattaaaaaattggatgtgtttttg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7056 agcataggataaaatacaatctctatgcaatgctatattaaaaaattggatgtgtttttg 7115
Query: 284 tttttcgtttcttcgaacaattaatgagaatg-gaacgatgcgataattatcaggtgctc 342
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 7116 tttttcgtttcttcgaacaattaatgagaatgcgaacgatgcgataattatcaggtgctc 7175
Query: 343 aacaccagaagttgtagaatctgatataccaaggcttgcttgccagatacatttctcttt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7176 aacaccagaagttgtagaatctgatataccaaggcttgcttgccagatacatttctcttt 7235
Query: 403 ccctgacctcttgcttgacgatttcgatatcgatattttttctatcagtttctaaatcga 462
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 7236 ccctgacctcttgcttgacgatttcgatatcgatattctccctatcagtttctaaatcga 7295
Query: 463 tttctgcaagtggtttgaaatcaaaccattttccagttgaacatttgaaatagatcttat 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7296 tttctgcaagtggtttgaaatcaaaccattttccagttgaacatttgaaatagatcttat 7355
Query: 523 gggtgacgaagacatacaccataaccagggcacataagtagttcttgaagaatgactctg 582
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 7356 gggtgacgaagacaaacaccaaaaccagggcacataagtagttcttgaagaatgactctg 7415
Query: 583 ttctttgttggcttgacgtcc-accacctactggccat-aagagatgtagatttgcgc-a 639
||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||| |
Sbjct: 7416 ttctttgttggcttgacgtccaaccacctactggccataaagagatgtagaattgcgcaa 7475
Query: 640 tgagaatt-atattgtgacggtagctgagt-aatagaaccgtatacg-cgactgaacttt 696
|||||||| |||| ||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 7476 tgagaattaatatgttgacggtagctgagtaaatagaaccgtatacgccgactgaacttt 7535
Query: 697 tg-attccatttcatc-agggatctattttgtgcc-tcattgc-agtctgaatc-tatgt 751
|| |||||| |||||| |||||||||||||||||| ||||||| |||||||||| |||||
Sbjct: 7536 tgaattccaattcatcaagggatctattttgtgccttcattgcaagtctgaatcttatgt 7595
Query: 752 gggaa 756
|||||
Sbjct: 7596 gggaa 7600
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8161
Number of Sequences: 1807
Number of extensions: 8161
Number of successful extensions: 75
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)