BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZD01FM1.SCF screened BAC_end
(897 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 1513 0.0
>3x_Contig1801
Length = 57606
Score = 1513 bits (763), Expect = 0.0
Identities = 781/787 (99%)
Strand = Plus / Plus
Query: 88 taagcatgatgatatggaaactattgaaatgtaagagtcatacgctggctttgcagtagt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41775 taagcatgatgatatggaaactattgaaatgtaagagtcatacgctggctttgcagtagt 41834
Query: 148 caatctagatctgtgaggcatagtgcaaagaatttgatactcaattacacaaatttgaca 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41835 caatctagatctgtgaggcatagtgcaaagaatttgatactcaattacacaaatttgaca 41894
Query: 208 aaatgagcttttatccgcaagatatagtaaaggagatggcaaattctcttcgtaacagca 267
||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41895 aaatgagctctcaaccgcaagatatagtaaaggagatggcaaattctcttcgtaacagca 41954
Query: 268 gatcacaattggatatgacgcttgcacaactggaacaactacagaggcaaaaaaagattg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41955 gatcacaattggatatgacgcttgcacaactggaacaactacagaggcaaaaaaagattg 42014
Query: 328 ctaagttgactgaaaaggaattgggaaattatggaaatgagcaagtgtggagatcttgtg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42015 ctaagttgactgaaaaggaattgggaaattatggaaatgagcaagtgtggagatcttgtg 42074
Query: 388 gtaagatgttcatccgtcaagagaagcaagcctacactgctgatttaaaccatgatgaaa 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42075 gtaagatgttcatccgtcaagagaagcaagcctacactgctgatttaaaccatgatgaaa 42134
Query: 448 gaatattggacgaacagataaaggcattggaacaaaagagacattacctacagaccacag 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42135 gaatattggacgaacagataaaggcattggaacaaaagagacattacctacagaccacag 42194
Query: 508 tcgataacacggtagagagtttgagaagagtcattggaaattaaatcaactactgagtcg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42195 tcgataacacggtagagagtttgagaagagtcattggaaattaaatcaactactgagtcg 42254
Query: 568 gcatcgacaggggtttttgtatgggtcaagcaatgtgggaagatagtacccttaaaagtc 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42255 gcatcgacaggggtttttgtatgggtcaagcaatgtgggaagatagtacccttaaaagtc 42314
Query: 628 gtattcatcatagaatagagttaaagtatttagcagtggtaatgttatatatagttgtac 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42315 gtattcatcatagaatagagttaaagtatttagcagtggtaatgttatatatagttgtac 42374
Query: 688 attaagaattctctatttcagaatacatgtggtctttattcatcgcacgtcaaggaggag 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42375 attaagaattctctatttcagaatacatgtggtctttattcatcgcacgtcaaggaggag 42434
Query: 748 gtacattcgatcaaaccgcactgtatccgcctctttgagacgatgaaccactatttacga 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42435 gtacattcgatcaaaccgcactgtatccgcctctttgagacgatgaaccactatttacga 42494
Query: 808 ttttccctgccacttctttagcgaattgggggagattgttagcgaacgtattcgatctat 867
|||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||
Sbjct: 42495 ttttccctgccacttctttagcgaattgtgggagattggtagcgaacgtagtcgatctat 42554
Query: 868 caacgaa 874
|||||||
Sbjct: 42555 caacgaa 42561
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5772
Number of Sequences: 1807
Number of extensions: 5772
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 897
length of database: 10,358,551
effective HSP length: 16
effective length of query: 881
effective length of database: 10,329,639
effective search space: 9100411959
effective search space used: 9100411959
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)