BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZD01RM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1512 680 0.0
3x_Contig849 260 5e-69
>3x_Contig1512
Length = 8803
Score = 680 bits (343), Expect = 0.0
Identities = 346/347 (99%)
Strand = Plus / Minus
Query: 48 gcgatttaaagaaggctatcgactactatgaaaaatctctaactgaacatcgtaccccag 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gcgatttaaagaaggctatcgactactatgaaaaatctctaactgaacatcgtaccccag 288
Query: 108 atatcttaacgaaattaagaaacacagaaaaggaactcaagcaaaaggaagcagaatctt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 atatcttaacgaaattaagaaacacagaaaaggaactcaagcaaaaggaagcagaatctt 228
Query: 168 acatggaccctgaaaaggcagaagaagctagattacaaggtaaggaatacttcactaagg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 acatggaccctgaaaaggcagaagaagctagattacaaggtaaggaatacttcactaagg 168
Query: 228 ctgactggccaaaggctgtcgaagcatacactgaaatgatcaaaagaaatccaaacgatg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 ctgactggccaaaggctgtcgaagcatacactgaaatgatcaaaagaaatccaaacgatg 108
Query: 288 ccagaggttactctaacagagctgcagctctatctaagttgatgtcattcgctgacgcca 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 ccagaggttactctaacagagctgcagctctatctaagttgatgtcattcgctgacgcca 48
Query: 348 ttagagactgtgacaaagccatcgagaaggatccaaactttgtcaga 394
|||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 47 ttagagactgtgacaaagccatcgagaaagatccaaactttgtcaga 1
>3x_Contig849
Length = 3479
Score = 260 bits (131), Expect = 5e-69
Identities = 192/207 (92%), Gaps = 4/207 (1%)
Strand = Plus / Minus
Query: 612 cagaagttgcatcaattttacaagaccctgtca-tgcaatctatactctcacaagctcag 670
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 3479 cagaagttgcatcaattttacaagaccctgtcaatgcaatctatactctcaaaagctcag 3420
Query: 671 caaaatcctggtgctttacaggaacacatgagaatacccagacgtcttcaagaagattca 730
|||||||||| ||||||| ||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 3419 caaaatcctgctgctttaaaggaacacatgagaa-acccagacgtcttcaagaaaattca 3361
Query: 731 aaccttgatcgccgcttggataattaaagactcgctagttctacagacaggcagtcatta 790
|||||| ||||||||| | |||| | |||||||||||||||||||||||| |||||| ||
Sbjct: 3360 aaccttaatcgccgctggtataa-tcaagactcgctagttctacagacagtcagtca-ta 3303
Query: 791 atactcgacctgaaacttcaacatgaa 817
|||||| |||||||||||||||||||
Sbjct: 3302 ttactcgccctgaaacttcaacatgaa 3276
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7244
Number of Sequences: 1807
Number of extensions: 7244
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 2
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)