BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZD02FM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1770 1588 0.0
>3x_Contig1770
Length = 29267
Score = 1588 bits (801), Expect = 0.0
Identities = 851/864 (98%), Gaps = 3/864 (0%)
Strand = Plus / Minus
Query: 87 tgcagaaaacttggagaagctaacaaacacacatacacttccgtctgtattattttctga 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12196 tgcagaaaacttggagaagctaacaaacacacatacacttccgtctgtattattttctga 12137
Query: 147 tccagcaacgtattggtacaacttacctatatgcgcgccaggttcgaagaattccttgtt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12136 tccagcaacgtattggtacaacttacctatatgcgcgccaggttcgaagaattccttgtt 12077
Query: 207 ttcagcctatatttttttcgttaatgtcggtttaaacaagaaggagaaggaaagaaaaag 266
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12076 ttcagcctataactctttcgttaatgtcggtttaaacaagaaggagaaggaaagaaaaag 12017
Query: 267 actgcaactatcgaaaaagaaagtagtcatgagtgatttgttaatgagtatcgatgattt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12016 actgcaactatcgaaaaagaaagtagtcatgagtgatttgttaatgagtatcgatgattt 11957
Query: 327 gatagaaaatgattatccaattcacttggattcaccaggtctaatagaagagttcaagga 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11956 gatagaaaatgattatccaattcacttggattcaccaggtctaatagaagagttcaagga 11897
Query: 387 aacattggaaaaattatactcgtccccttattattcagagtggacggacaccaagactat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11896 aacattggaaaaattatactcgtccccttattattcagagtggacggacaccaagactat 11837
Query: 447 tgaccgtgatggccctcgaacatttgcaatagattgtgaaatgtgtatgtcagaaaacgg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11836 tgaccgtgatggccctcgaacatttgcaatagattgtgaaatgtgtatgtcagaaaacgg 11777
Query: 507 acatgttctaacccgatgcagtattgtaaatttcgacggtgatctcatttatgataaatt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11776 acatgttctaacccgatgcagtattgtaaatttcgacggtgatctcatttatgataaatt 11717
Query: 567 ggtgaagcctgatgttccaattatagattatttgaccaagtacagcggaataaccgaaga 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11716 ggtgaagcctgatgttccaattatagattatttgaccaagtacagcggaataaccgaaga 11657
Query: 627 aaaactacgcgacgttactactacattgaaggatgtacaggaggatcttctcaatatcat 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11656 aaaactacgcgacgttactactacattgaaggatgtacaggaggatcttctcaatatcat 11597
Query: 687 tagctcanaggatgtattaattggacattcgttgcagtcggaccttaacgttttaaagct 746
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11596 tagctcaaaggatgtattaattggacattcgttgcagtcggaccttaacgttttaaagct 11537
Query: 747 aagacatcccaatatcgttgacacggcagttatttacgagcacaaagcaggtcctccatt 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11536 aagacatcccaatatcgttgacacggcagttatttacgagcacaaagcaggtcctccatt 11477
Query: 807 cagaccagcccttaagtatttgccctcggaatatttgaaatgtgatattcaaaaagatac 866
|||||||||||| | ||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 11476 cagaccagccctaaggtatttggcctcggaatatttgaatgttgatattcaaaaagatac 11417
Query: 867 aggctttgggccatgattcttatgaagacgct-aaacatgcatggaactgaccaagctgn 925
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 11416 aggc-ttgggccatgattcttatgaagacgctaaaacatgcatggaactgaccaagctg- 11359
Query: 926 aagatcgtaaacggattgacgttt 949
||||||||||||||||||||||||
Sbjct: 11358 aagatcgtaaacggattgacgttt 11335
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6922
Number of Sequences: 1807
Number of extensions: 6922
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)