BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZD02RM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1595 1348 0.0
>3x_Contig1595
Length = 10795
Score = 1348 bits (680), Expect = 0.0
Identities = 781/810 (96%), Gaps = 4/810 (0%)
Strand = Plus / Plus
Query: 34 agcttccca-tgagtacttctccggcaaacaattgattgaatccattaggaaacagtatc 92
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1649 agcttcccaatgagtacttctccggcaaacaattgattgaatccattaggaaacagtatc 1708
Query: 93 ctgatagcgttgtttctttgtaccaacaagaaaaattgggccaatggttcatgagtgaag 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1709 ctgatagcgttgtttctttgtaccaacaagaaaaattgggccaatggttcatgagtgaag 1768
Query: 153 gttacatggctcattataacgatctcctcggggtgaggaaagcgttcagttgtaacggct 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1769 gttacatggctcattataacgatctcctcggggtgaggaaagcgttcagttgtaacggct 1828
Query: 213 actactgctggaaagaactggatcagcagaaatctgtcaagtacaacctggcaacggtga 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1829 actactgctggaaagaactggatcagcagaaatctgtcaagtacaacctggcaacggtga 1888
Query: 273 acggattaatttgggaacaatggagtaaatatacgatgcaaaagttacagtttgaaacga 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1889 acggattaatttgggaacaatggagtaaatatacgatgcaaaagttacagtttgaaacga 1948
Query: 333 accatttcaatcagatggatcaattagcacagctgagagaagagctagtgcaaacaatga 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1949 accatttcaatcagatggatcaattagcacagctgagagaagagctagtgcaaacaatga 2008
Query: 393 agcatttcaacggtacactggaggatacatggcacattacaagcaaggaaagtgtaaaac 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2009 agcatttcaacggtacactggaggatacatggcacattacaagcaaggaaagtgtaaaac 2068
Query: 453 ccagcagtgtaacggtacaatccatgtatgatcagaacatgggcagtattggtttttacg 512
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 2069 ccagcagtgtaacggtacaatccatgtatgagcagaacatgggcagtattggtttttacg 2128
Query: 513 tgacatcgaacgaacctattatcaagtacaatagtgagacaacaaagtttgaaatgacta 572
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2129 tgacatcgaacgaacctataatcaagtacaatagtgagacaacaaagtttgaaatgacta 2188
Query: 573 gtcccatacctgatgatattacaagccactcccttctacacaagctaatagatgagattg 632
|||| |||||||||||||||||| || ||||||||||||||| |||||||||||||||||
Sbjct: 2189 gtccaatacctgatgatattacaggcaactcccttctacacaggctaatagatgagattg 2248
Query: 633 agattgagactngagatcacgtanag-acattcaaccgtgttggattaccgaatttgatt 691
||||||||||| ||||||||| || |||| ||| ||||||||| |||||||||||||
Sbjct: 2249 agattgagactgaggatcacgtagagaacatcaaacggtgttggataaccgaatttgatt 2308
Query: 692 tgatcaactggcatccgatcaaggaggacctattgagaagatggatgcgcgttcaaacgg 751
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2309 tgatcaactggcatcgaatcaaggaggacctattgagaagatggatgcgcgttcaaactg 2368
Query: 752 tggataaagatgacttcgcgcagtttgaatttgacactgggaaaagaaattcttactact 811
||||||||||||| |||| ||||||||||||||||| |||||||||| | |||||||
Sbjct: 2369 gtgataaagatgactacgcg-agtttgaatttgacact-ggaaaagaaagttctactact 2426
Query: 812 gaagggcttgctcatcgaatttgatgattc 841
|||||||| |||||||||||| ||||||||
Sbjct: 2427 gaagggctggctcatcgaattggatgattc 2456
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6352
Number of Sequences: 1807
Number of extensions: 6352
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)