BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZD03FM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1708 1616 0.0
>3x_Contig1708
Length = 19451
Score = 1616 bits (815), Expect = 0.0
Identities = 836/842 (99%), Gaps = 1/842 (0%)
Strand = Plus / Plus
Query: 85 tccaaacattttatcatttcaaaatcagaaatcaagtccagtttgaattgggaagatgtt 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10063 tccaaacattttatcatttcaaaatcagaaatcaagtccagtttgaattgggaagatgtt 10122
Query: 145 tgatccaaaaaattatgagcaacaaatgtgagaagtctttcaaaaagttcgcttcttatt 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10123 tgatccaaaaaattatgagcaacaaatgtgagaagtctttcaaaaagttcgcttcttatt 10182
Query: 205 tttaagtgtttcttggggttgttagcaacaggcggtatgtggtttgataatgcatattta 264
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10183 tttaagtgtttcatggggttgttagcaacaggcggtatgtggtttgataatgcatattta 10242
Query: 265 atctcatcactggacatttgaatatctgtttcaatttcttgtggttgtagatctagattg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10243 atctcatcactggacatttgaatatctgtttcaatttcttgtggttgtagatctagattg 10302
Query: 325 tcaggtaagttgaagtctagtaatgaatccgttgattgtcctccaaaatagacgtattga 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10303 tcaggtaagttgaagtctagtaatgaatccgttgattgtcctccaaaatagacgtattga 10362
Query: 385 tccacatgagactttatgaatctaatttcttggaagtcagagttttcgtatttttcaaaa 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10363 tccacatgagactttatgaatctaatttcttggaagtcagagttttcgtatttttcaaaa 10422
Query: 445 gtctccaactttaacgcacatgttcttccatcagtaatgtataaggaacttgaattacaa 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10423 gtctccaactttaacgcacatgttcttccatcagtaatgtataaggaacttgaattacaa 10482
Query: 505 tcgtacccaagaactttcatatctttgttaaaccgtataatgtcctcccatttcctttta 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10483 tcgtacccaagaactttcatatctttgttaaaccgtataatgtcctcccatttcctttta 10542
Query: 565 aatggataattagagtccaatttggaacttgtttgagttaggacagcagcatcagagaat 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10543 aatggataattagagtccaatttggaacttgtttgagttaggacagcagcatcagagaat 10602
Query: 625 aaagtgtaaacagacgttatcggtaaatgttccttggtgtatgcagttgggactataagt 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10603 aaagtgtaaacagacgttatcggtaaatgttccttggtgtatgcagttgggactataagt 10662
Query: 685 cttggggcaaattcatctgataatggtcgcgtgtatgtgtttaatctgtaagtagagaag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10663 cttggggcaaattcatctgataatggtcgcgtgtatgtgtttaatctgtaagtagagaag 10722
Query: 745 atagcgaaactgttagtatcttcatccacaatgatggttgatagtaaatagtgcgtttcg 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10723 atagcgaaactgttagtatcttcatccacaatgatggttgatagtaaatagtgcgtttcg 10782
Query: 805 ttactttccgctaagaaactcaagaac-agtatgcatccgagtctcctgataaaggatga 863
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 10783 ttactttccgctaagaaactcaagaacaagtatgcatccgagtctcctgataaaggatga 10842
Query: 864 cnatcgagtagtttcagtgtagatgttgccaagggggaaagctctaagactggctgtgaa 923
| |||||||||||||||||||||||||||||||||| || |||||||||||| |||||||
Sbjct: 10843 caatcgagtagtttcagtgtagatgttgccaaggggaaatgctctaagactgcctgtgaa 10902
Query: 924 at 925
||
Sbjct: 10903 at 10904
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6970
Number of Sequences: 1807
Number of extensions: 6970
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)