BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZD03RM1.SCF screened BAC_end
(969 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1142 1158 0.0
>3x_Contig1142
Length = 5741
Score = 1158 bits (584), Expect = 0.0
Identities = 637/651 (97%), Gaps = 4/651 (0%)
Strand = Plus / Minus
Query: 49 ttttacgagattatccacgtatgaattgtaatcatctttgatcaatgtgaatgggtaaga 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ttttacgagattatccacgtatgaattgtaatcatctttgatcaatgtgaatgggtaaga 591
Query: 109 gaaatcgatggtgaaactgaagaatttacccactggcaaatcctggttagcattcgaata 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gaaatcgatggtgaaactgaagaatttacccactggcaaatcctggttagcattcgaata 531
Query: 169 atcatcttccgtagtgacacctttataccttagaaattcatgttgaggctcaaactctga 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 atcatcttccgtagtgacacctttataccttagaaattcatgttgaggctcaaactctga 471
Query: 229 agagacgactttgattctcaatttttcaagctgtgtcgctttcttcttacccccttcctc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 agagacgactttgattctcaatttttcaagctgtgtcgctttcttcttacccccttcctc 411
Query: 289 tgtcttggatgtgactttcttcttaaagatgatctcatcatcagtattgataatgttgta 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tgtcttggatgtgactttcttcttaaagatgatctcatcatcagtattgataatgttgta 351
Query: 349 cagtgtgaataaatcttctttatcctgaggttgaagagtcaaaatggctctttccccact 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 cagtgtgaataaatcttctttatcctgaggttgaagagtcaaaatggctctttccccact 291
Query: 409 gtgtgaaccggtcactttattgattaacctcattgcttctttacccgttaacttgagaca 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gtgtgaaccggtcactttattgattaacctcattgcttctttacccgttaacttgagaca 231
Query: 469 cctctttgggtacgttctgtattaagtgctgtttcaataaattgctgtcaggtgtataaa 528
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 cctctttgggtacgttctgtattaagtgctgtttcaataaattgctgtcaggtgtataag 171
Query: 529 gtatgcttttgccaatacctctttatttcatgatttatagtcagatttcatttttaaagc 588
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 gtatgcttttgccaatacctctttatttcatgatttatagtcagatttcatttttaagct 111
Query: 589 ttgaaaaaaaaa-gtttgccatgaagataccgaagagaaagagcaactatgtaagttaca 647
|||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 110 ttgaaaaaaaaaggtttgccatgaagataccgaagagaagaagcaactaggtaagttaca 51
Query: 648 tggacatttacatntgacaaaagtttgtt--cgtatggcttaatgtgtaaa 696
|||||| |||||| ||||||||||||||| |||| ||||||||||||||
Sbjct: 50 tggacaattacat-tgacaaaagtttgtttctgtatcgcttaatgtgtaaa 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8479
Number of Sequences: 1807
Number of extensions: 8479
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 969
length of database: 10,358,551
effective HSP length: 16
effective length of query: 953
effective length of database: 10,329,639
effective search space: 9844145967
effective search space used: 9844145967
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)