BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZD04FM1.SCF screened BAC_end
(897 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1325 1544 0.0
>3x_Contig1325
Length = 7053
Score = 1544 bits (779), Expect = 0.0
Identities = 804/811 (99%), Gaps = 1/811 (0%)
Strand = Plus / Minus
Query: 87 ttagaaagcatgtatcaatattttgaaccttgtttcaatatcgattattatcatctaaac 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4441 ttagaaagcatgtatcaatattttgaaccttgtttcaatatcgattattatcatctaaac 4382
Query: 147 tcgtacaagctccagatcgtcagtagaatattcttggagcttgtgagcaggtacaacaaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4381 tcgtacaagctccagatcgtcagtagaatattcttggagcttgtgagcaggtacaacaaa 4322
Query: 207 ttcataatatcttcagacccagccttatcattgcttccggaagaaaaacaactggaaatc 266
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4321 ttcataatatcgccagacccagccttatcattgcttccggaagaaaaacaactggaaatc 4262
Query: 267 actttcttgaagctacacaatatagttcttcttgaacaatgtgtgtctgaacttcgcttc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4261 actttcttgaagctacacaatatagttcttcttgaacaatgtgtgtctgaacttcgcttc 4202
Query: 327 aaaccagcatttattgagttgacatatattttcaacaaattgagtaactcgacttatcca 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4201 aaaccagcatttattgagttgacatatattttcaacaaattgagtaactcgacttatcca 4142
Query: 387 agtatctttacggaatccttctcagctctggaagaaacagtcgtgacagtaagggaatca 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4141 agtatctttacggaatccttctcagctctggaagaaacagtcgtgacagtaagggaatca 4082
Query: 447 atcattcataggtggaagaaaatattaaaagcctctctcagtccctactttagactcagc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4081 atcattcataggtggaagaaaatattaaaagcctctctcagtccctactttagactcagc 4022
Query: 507 aaatggcaggagatttctaaccctccggctcaatgttcaactgagttgataggcgcgatc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4021 aaatggcaggagatttctaaccctccggctcaatgttcaactgagttgataggcgcgatc 3962
Query: 567 cagaaatcatccaagcttaaggctgaatttgctctgttaaagttgccaacaaatatttct 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3961 cagaaatcatccaagcttaaggctgaatttgctctgttaaagttgccaacaaatatttct 3902
Query: 627 atttccattttccatggtttacttacgcaatggatattttacttgaaagactacgttgtc 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3901 atttccattttccatggtttacttacgcaatggatattttacttgaaagactacgttgtc 3842
Query: 687 aaagttaataacttctctgaaaatggattaaaacaagtcatgcttgattatggagagttg 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3841 aaagttaataacttctctgaaaatggattaaaacaagtcatgcttgattatggagagttg 3782
Query: 747 aaaactgtattacaactagatgatgttccacaatgtgttcaagaagaagaaattgaagaa 806
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 3781 aaaactgtattacaactagatgatgttccacaatgtgttcaagaagaagaatttgaagag 3722
Query: 807 gtcatgaaagtcttaagcctaaagtacaacggcaaatctcaagtactttctttttttgag 866
||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 3721 ttcatgaaagtcttaagcctaaagtacaacggcaaatctcaagtac-ttccttttttgag 3663
Query: 867 taaaggatatatgtcacaatcccaagactat 897
|||||||||||||||||||||||||||||||
Sbjct: 3662 taaaggatatatgtcacaatcccaagactat 3632
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8371
Number of Sequences: 1807
Number of extensions: 8371
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 897
length of database: 10,358,551
effective HSP length: 16
effective length of query: 881
effective length of database: 10,329,639
effective search space: 9100411959
effective search space used: 9100411959
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)