BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZD04RM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1746 1055 0.0
>3x_Contig1746
Length = 26672
Score = 1055 bits (532), Expect = 0.0
Identities = 627/652 (96%), Gaps = 5/652 (0%)
Strand = Plus / Plus
Query: 50 agcaaaaacgtccaccaatgtccgaatgcatacgaagtccagccagattacagcgcttat 109
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 17959 agcaaaaacgtccaccaa-gtccgaatgcatacgaagtccagccagattacagcgcttat 18017
Query: 110 agagataagaacagaaaagacgctcaatgatttaggaatttgatcagcatactctttcac 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18018 agagataagaacagaaaagacgctcaatgatttaggaatttgatcagcatactctttcac 18077
Query: 170 ttcttgtacatttcgttgcatcttctactcactacaacaatgcactgctgaaaaggtaat 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18078 ttcttgtacatttcgttgcatcttctactcactacaacaatgcactgctgaaaaggtaat 18137
Query: 230 tggcagttcaaatgtatatatatacatatgcatatataatctatcaggcaattatatcga 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18138 tggcagttcaaatgtatatatatacatatgcatatataatctatcaggcaattatatcga 18197
Query: 290 ataacaatcgacttacacatggttattttattgtatgctattatggtaggacgtctgggt 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18198 ataacaatcgacttacacatggttattttattgtatgctattatggtaggacgtctgggt 18257
Query: 350 tctgacataactcaggtgctcataaatgagagctctgctacaaaccaacttctatattga 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18258 tctgacataactcaggtgctcataaatgagagctctgctacaaaccaacttctatattga 18317
Query: 410 ttaatatgctgtaagtttctcttggcattttgtattgaatcataccagcataaatcatac 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18318 ttaatatgctgtaagtttctcttggcattttgtattgaatcataccagcataaatcatac 18377
Query: 470 aatttttagcaacacgtttgagagattcgatttgctgctttttagtcaaagattgggaat 529
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 18378 aatttttagcaacacgtttgagagaatcgatttgctgctttttagtcaaagattggtaat 18437
Query: 530 cacttttcgttcaactgctttatgatgttagaaatgc-taaccttgtaattatcaacaag 588
||| ||||||||||||||||||||||||||||||||| || | ||||||||||||||| |
Sbjct: 18438 cac-tttcgttcaactgctttatgatgttagaaatgcatagcattgtaattatcaacagg 18496
Query: 589 ttaggaatgttc-ttaaaatattcccatccaaatgggtaaattcctg-gctctttttttg 646
||||| |||||| |||| |||||| |||||||||| |||||||| || ||||||||| ||
Sbjct: 18497 ttaggtatgttctttaatatattctcatccaaatgtgtaaattcttgtgctctttttctg 18556
Query: 647 ttcgaactttcattcctgaaacgaattaaatccagatcttcattccgttgta 698
|||| ||||||| | |||| |||||||||| ||||||||| || ||||||
Sbjct: 18557 gtcgagctttcatccgtgaacggaattaaatcgagatcttcaatctgttgta 18608
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9538
Number of Sequences: 1807
Number of extensions: 9538
Number of successful extensions: 124
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)