BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZD05RM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1641 1209 0.0
>3x_Contig1641
Length = 13261
Score = 1209 bits (610), Expect = 0.0
Identities = 706/724 (97%), Gaps = 12/724 (1%)
Strand = Plus / Plus
Query: 30 actcaagcttacca-ttggctttggccatcagagatgaagtctctgatttggaagctgcc 88
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1153 actcaagcttaccaattggctttggccatcagagatgaagtctctgatttggaagctgcc 1212
Query: 89 ggtattaaggtcatccaagtcgatgaaccagccgtcagagaaggtttgccattgagagcc 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1213 ggtattaaggtcatccaagtcgatgaaccagccgtcagagaaggtttgccattgagagcc 1272
Query: 149 ggtcaagaaagaaccgaatactacaactggtctgctgaatctttcagagttgctacctct 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1273 ggtcaagaaagaaccgaatactacaactggtctgctgaatctttcagagttgctacctct 1332
Query: 209 gttgttgccaacaagactcaaatccactctcacttctgttactccgatttggaccctaac 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1333 gttgttgccaacaagactcaaatccactctcacttctgttactccgatttggaccctaac 1392
Query: 269 catatcaaggctttggatgctgatgtcgtttctatcgaattttccaagaaggacgatcca 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1393 catatcaaggctttggatgctgatgtcgtttctatcgaattttccaagaaggacgatcca 1452
Query: 329 aactacattctgcaatttgctaactatccaaaccactctggtctaggtttgttcgatatc 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1453 aactacattctgcaatttgctaactatccaaaccactctggtctaggtttgttcgatatc 1512
Query: 389 cactctccaagagttccatccaaggaagaattcattcaaaagatggaagaattcttgaag 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1513 cactctccaagagttccatccaaggaagaattcattcaaaagatggaagaattcttgaag 1572
Query: 449 tactacccagctgaaaagttctgggttaacccagactgtggtttgaagactagaggctgg 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1573 tactacccagctgaaaagttctgggttaacccagactgtggtttgaagactagaggctgg 1632
Query: 509 gaagataccaatgctaccttgaccaacatggttaacgctgctaagcacttncgtgaaatc 568
||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1633 gaagaaaccaaggctaccttgaccaacatggttaacgctgctaagcacttccgtgaaatc 1692
Query: 569 tacgctaagaaat-aatagactcgtgagtttgt-acaacactcaagcgtctttttatcta 626
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1693 tacgctaagaaataaatagactcgtgagtttgtaacaacactcaagcgtctttttatcta 1752
Query: 627 ttatgcattattggatttaaggaacaggataaaaaatcagccttaacccataaccaactt 686
||||||||||||||| ||||||||||| ||||||||||||| |||||| |||| ||||||
Sbjct: 1753 ttatgcattattgga-ttaaggaacagaataaaaaatcagcattaaccaataa-caactt 1810
Query: 687 ttattttcattttaaagtggtctttcaatgctttcaagtgggtctatttaatttccaatg 746
||| ||||||||| |||| |||||||||||| ||||||| |||||||| ||||||||||
Sbjct: 1811 tta-tttcatttt-aagt-gtctttcaatgc-ttcaagt-ggtctatt--atttccaatg 1863
Query: 747 aatt 750
||||
Sbjct: 1864 aatt 1867
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,447
Number of Sequences: 1807
Number of extensions: 18447
Number of successful extensions: 2340
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)