BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZD06FM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1711 1439 0.0
>3x_Contig1711
Length = 15491
Score = 1439 bits (726), Expect = 0.0
Identities = 818/841 (97%), Gaps = 6/841 (0%)
Strand = Plus / Minus
Query: 86 taatttgattgcgatttctggatccaagaagtcataaacgttcttaccatctaagatttc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3773 taatttgattgcgatttctggatccaagaagtcataaacgttcttaccatctaagatttc 3714
Query: 146 tggcatgacatcgttcttccattcatcgtcttccaatagatacttgtccttcaaattaac 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3713 tggcatgacatcgttcttccattcatcgtcttccaatagatacttgtccttcaaattaac 3654
Query: 206 gttgtatacattttccccaccgttttcgatttcaatttctttagccaattttcttctgtt 265
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3653 gttgtatacaccggccccaccgttttcgatttcaatttctttagccaattttcttctgtt 3594
Query: 266 tggatcttctggatcatatttcttcatcttagcgatggcttctggaatatatggagttct 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3593 tggatcttctggatcatatttcttcatcttagcgatggcttctggaatatatggagttct 3534
Query: 326 gtcaataccatcatcacgcttttgaggttgagcgacgtggatcttgtttaagacgttagt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3533 gtcaataccatcatcacgcttttgaggttgagcgacgtggatcttgtttaagacgttagt 3474
Query: 386 gattctagcttgagattttagcttgttttcaattctggaagccaacaacttttcacaagc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3473 gattctagcttgagattttagcttgttttcaattctggaagccaacaacttttcacaagc 3414
Query: 446 cttgtttctaacagccataacgttatcttcttcatgacaagaagtggtcatgatttcaac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3413 cttgtttctaacagccataacgttatcttcttcatgacaagaagtggtcatgatttcaac 3354
Query: 506 acctggaacttccaaaacagtatccaaaagtttcttacgttcttcgtctaaatctt-cag 564
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 3353 acctggaacttccaaaacagtatccaaaagtttcttacgttcttcgtctaaatcttacag 3294
Query: 565 gtttaatgatatcagtcttgttaatgacgaccatgacggatttattggcaaacaatggtt 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3293 gtttaatgatatcagtcttgttaatgacgaccatgacggatttattggcaaacaatggtt 3234
Query: 625 tgatcgaatggaataatttgacttgagcttcaatagagaaaccacactgttctgatagat 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3233 tgatcgaatggaataatttgacttgagcttcaatagagaaaccacactgttctgatagat 3174
Query: 685 ccatgaagtacataacagtagaacgcanatgagcaatagcataaatggattgcatttcga 744
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 3173 ccatgaagtacataacagtagaacgcaaatgagcaatagcataaatggattgcatttcga 3114
Query: 745 cgttgttcatttcatccgtaggtctatccaagatacctggagtatcaatcgcttgggatc 804
|||| || ||||||||| ||||||||||||||||||||||| ||| ||| | |||| ||
Sbjct: 3113 cgtttttgatttcatccttaggtctatccaagatacctggattatgaatgggttggaatg 3054
Query: 805 tcaagtatttataatcaaaatgacccacatatagcgacttggtgttgaaaagcat-aggt 863
||||||||||||||| |||||||||||||||||||||||||||| || ||||||| ||||
Sbjct: 3053 tcaagtatttataatgaaaatgacccacatatagcgacttggtggtg-aaagcataaggt 2995
Query: 864 tgcacttcgacatcagccttagtgatacattctc-agaaagaaggatttacccccatttg 922
||||||||||||||||||||||||||||| |||| |||||| ||||||||||| ||||||
Sbjct: 2994 tgcacttcgacatcagccttagtgataca-tctcaagaaag-aggatttacccacatttg 2937
Query: 923 g 923
|
Sbjct: 2936 g 2936
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7562
Number of Sequences: 1807
Number of extensions: 7562
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)