BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC9ZD06RM1.SCF screened BAC_end
         (972 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1806                                                        1251   0.0  

>3x_Contig1806 
          Length = 53694

 Score = 1251 bits (631), Expect = 0.0
 Identities = 735/765 (96%), Gaps = 4/765 (0%)
 Strand = Plus / Minus

                                                                         
Query: 48    actggaccaaacgaattaaaaggaatgatgatttatgaagacggaagctcgctttttatt 107
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35704 actggaccaaacgaattaaaaggaatgatgatttatgaagacggaagctcgctttttatt 35645

                                                                         
Query: 108   ggtaaacattccggtgatatcatagaaggtacaattcaagaggatgggtccttgaaattg 167
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35644 ggtaaacattccggtgatatcatagaaggtacaattcaagaggatgggtccttgaaattg 35585

                                                                         
Query: 168   ggcactggagagttcattgggataaacaagaactatctaactttaaccactaactatacc 227
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35584 ggcactggagagttcattgggataaacaagaactatctaactttaaccactaactatacc 35525

                                                                         
Query: 228   caatacgctacgccatttgctatcaatggggatggatatttgacgctgtatggagaaaaa 287
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35524 caatacgctacgccatttgctatcaatggggatggatatttgacgctgtatggagaaaaa 35465

                                                                         
Query: 288   gaattcaaggccattccaagcggtcagacagacatatggattttggcttctaataatgct 347
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35464 gaattcaaggccattccaagcggtcagacagacatatggattttggcttctaataatgct 35405

                                                                         
Query: 348   gtttcaacattggattcggtgcacacaactaaagtcaagtgtgttgactcagacggaaag 407
             |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 35404 gtttcaacattggattcggtgcacacaactaaggtcaagtgtgttgactcagacggaaag 35345

                                                                         
Query: 408   aaagttaataaatttaccgtcaacggcagtagtgcatctaaacttctcaacaaaaccgaa 467
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35344 aaagttaataaatttaccgtcaacggcagtagtgcatctaaacttctcaacaaaaccgaa 35285

                                                                         
Query: 468   ttattggctgtactcttcttttcctttagtgcttatgttctgttttgatatatattcaac 527
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35284 ttattggctgtactcttcttttcctttagtgcttatgttctgttttgatatatattcaac 35225

                                                                         
Query: 528   attactttgttaactncctttatgtatacagtaaagatcctattagcaattcgaatatta 587
             ||||||||||||||| ||||  ||||||||||||||||||||| |||||||||||||| |
Sbjct: 35224 attactttgttaactcccttattgtatacagtaaagatcctataagcaattcgaatataa 35165

                                                                         
Query: 588   ttattacatcatgctcagaatattagagaaagctttattaaagatcttncatattatcaa 647
             ||||||||||||||||||||||||||||||   ||||||||||||||| |||||||||||
Sbjct: 35164 ttattacatcatgctcagaatattagagaagcttttattaaagatcttccatattatcaa 35105

                                                                         
Query: 648   tgcatcctaaaatac-ttttgataaaggcatgagtcgattttattca-ataagatacttc 705
             |||||||| |||||| ||||||||| ||||||||||||||||||||| ||| ||||||||
Sbjct: 35104 tgcatcct-aaatactttttgataagggcatgagtcgattttattcagataggatacttc 35046

                                                                         
Query: 706   gaaatcctagataagagtttgaagggttggtattgatgctttcattt-ttcatttgaaaa 764
             |||||||||||||  |||||||  | ||| ||||||||||||||||| | ||| ||| ||
Sbjct: 35045 gaaatcctagatagtagtttgagtgtttgttattgatgctttcatttatacatatgagaa 34986

                                                          
Query: 765   atagacaggggttgaatagttaaaaattgttgggggagcccgaaa 809
              |||||||  |||||||||||||||||||||| |||||| |||||
Sbjct: 34985 gtagacagtagttgaatagttaaaaattgttgtgggagcacgaaa 34941


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8653
Number of Sequences: 1807
Number of extensions: 8653
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)