BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZD07FM1.SCF screened BAC_end
(899 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1466 1536 0.0
3x_Contig77 163 8e-40
>3x_Contig1466
Length = 8735
Score = 1536 bits (775), Expect = 0.0
Identities = 803/811 (99%), Gaps = 1/811 (0%)
Strand = Plus / Plus
Query: 90 gctccattggatgactatcaaattcaaacgatcgcatatagaattttccgtctgttggga 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5291 gctccattggatgactatcaaattcaaacgatcgcatatagaattttccgtctgttggga 5350
Query: 150 gcaccaaaattacctgaaaacttgtcgtcagttgctgtgaagactcttctagttataatc 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5351 gcaccaaaattacctgaaaacttgtcgtcagttgctgtgaagactcttctagttataatc 5410
Query: 210 atgaaatggaatgaaaataatacgccgtacattcataattcagaagagaattcagtgtcc 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5411 atgaaatggaatgaaaataatacgccgtacattcataattcagaagagaattcagtgtcc 5470
Query: 270 agatattcaaacgcgatagagtttgccattgctagaactggttggataatcagaagtgag 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5471 agatattcaaacgcgatagagtttgccattgctagaactggttggataatcagaagtgag 5530
Query: 330 gataatccaaacgattctcataattcgaaaaaagctgccattcagctggctgcattaacc 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5531 gataatccaaacgattctcataattcgaaaaaagctgccattcagctggctgcattaacc 5590
Query: 390 atgcagattttgagcagcgaaagattgtcagaagaggcagaaaaattcattatgccatta 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5591 atgcagattttgagcagcgaaagattgtcagaagaggcagaaaaattcattatgccatta 5650
Query: 450 tacatgtatgttgaaactaatgttaacagattagacgaagatcaagaggagcttcataac 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5651 tacatgtatgttgaaactaatgttaacagattagacgaagatcaagaggagcttcataac 5710
Query: 510 ttggctcaagagtgcataaaaatcttggagtccaaaatatctgtatcagctttcacatca 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5711 ttggctcaagagtgcataaaaatcttggagtccaaaatatctgtatcagctttcacatca 5770
Query: 570 gcatatgctagtgttaagcagcaggtaattaaaagaagagaagaaagaagagcaaagaga 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5771 gcatatgctagtgttaagcagcaggtaattaaaagaagagaagaaagaagagcaaagaga 5830
Query: 630 gcggttttagctgttagagcgcctgatgtagcagctaatagaaaactaaagaagcatgca 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5831 gcggttttagctgttagagcgcctgatgtagcagctaatagaaaactaaagaagcatgca 5890
Query: 690 agatctagagaaaagagaaagcatgaaaaggatgaaaacggattctatcagagaaaaaac 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5891 agatctagagaaaagagaaagcatgaaaaggatgaaaacggattctatcagagaaaaaac 5950
Query: 750 aagaaaagaagaattccattattgcattcgggatttattaatcgttaagtagcccgtcat 809
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 5951 aagaaaagaagaattccataattgcattcgggatttattaatcgttaagtagcccgtcat 6010
Query: 810 aattaaaactttatagagtagtatatttcaattattttacagttgaagtttatatttatg 869
||||||||||||||||||||||||||||||||||||| ||||| | ||| ||||| |||
Sbjct: 6011 aattaaaactttatagagtagtatatttcaattatttaacagtgaatgttaatattaatg 6070
Query: 870 ttgaaggaagttagatt-attatacaaaaga 899
||||||||||||||||| |||||||||||||
Sbjct: 6071 ttgaaggaagttagattaattatacaaaaga 6101
>3x_Contig77
Length = 1038
Score = 163 bits (82), Expect = 8e-40
Identities = 154/178 (86%)
Strand = Plus / Minus
Query: 585 aagcagcaggtaattaaaagaagagaagaaagaagagcaaagagagcggttttagctgtt 644
|||||||||| || |||||||||||||||||||||||||||||||||| | ||| |
Sbjct: 387 aagcagcagggaaggaaaagaagagaagaaagaagagcaaagagagcggggtgagcgggg 328
Query: 645 agagcgcctgatgtagcagctaatagaaaactaaagaagcatgcaagatctagagaaaag 704
|||||||| || | |||||| || ||||||| ||||||||| |||||| | |||||||||
Sbjct: 327 agagcgccggagggagcagcgaagagaaaacgaaagaagcaggcaagagcgagagaaaag 268
Query: 705 agaaagcatgaaaaggatgaaaacggattctatcagagaaaaaacaagaaaagaagaa 762
|||||||| |||||||| ||||||||| | | |||||||||||||||||||||||||
Sbjct: 267 agaaagcaggaaaaggaggaaaacggaggcgagcagagaaaaaacaagaaaagaagaa 210
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7976
Number of Sequences: 1807
Number of extensions: 7976
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 2
length of query: 899
length of database: 10,358,551
effective HSP length: 16
effective length of query: 883
effective length of database: 10,329,639
effective search space: 9121071237
effective search space used: 9121071237
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)