BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZD07RM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1250 1467 0.0
>3x_Contig1250
Length = 5563
Score = 1467 bits (740), Expect = 0.0
Identities = 794/807 (98%), Gaps = 4/807 (0%)
Strand = Plus / Minus
Query: 48 ctcgaacttcacgatatacaatctcagagagccgttgctgccatatttgccaatattgca 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3138 ctcgaacttcacgatatacaatctcagagagccgttgctgccatatttgccaatattgca 3079
Query: 108 agcaccgttccgttcatttgcaaagaactatctgagaagcgaaaccttatcgaaacagca 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3078 agcaccgttccgttcatttgcaaagaactatctgagaagcgaaaccttatcgaaacagca 3019
Query: 168 ataagagtctttaaaacacaaaacacggatacagacctcaggataagattactcgtactc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3018 ataagagtctttaaaacacaaaacacggatacagacctcaggataagattactcgtactc 2959
Query: 228 ttgtcatctatcttcaacgccaatgcgcatgctgtcgcatgtgtcaagaatgatgaagaa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2958 ttgtcatctatcttcaacgccaatgcgcatgctgtcgcatgtgtcaagaatgatgaagaa 2899
Query: 288 tttgtaaaagaattgcaaaaatatcgtaatactccatctcaaaaagatccattaacacca 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2898 tttgtaaaagaattgcaaaaatatcgtaatactccatctcaaaaagatccattaacacca 2839
Query: 348 gaattatcgaaagaaatactttctctaatcaattgatatatagaacaatcaacaaggtat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2838 gaattatcgaaagaaatactttctctaatcaattgatatatagaacaatcaacaaggtat 2779
Query: 408 agcagtatgcgatttgtacatccttttatatctcatctcagcctatatttgtcaacggga 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2778 agcagtatgcgatttgtacatccttttatatctcatctcagcctatatttgtcaacggga 2719
Query: 468 atgaggctggatagactgctcaaaatgtaaaaaaagcctatagcccgatttaaccaaaca 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2718 atgaggctggatagactgctcaaaatgtaaaaaaagcctatagcccgatttaaccaaaca 2659
Query: 528 cttttaaatacttaaaccaacgatcaaagaaaaagctacataaaggacctgagctaacca 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2658 cttttaaatacttaaaccaacgatcaaagaaaaagctacataaaggacctgagctaacca 2599
Query: 588 tactgtctataaccatcaacttgcttaaatactaaaccgaaagacagcttacatattatg 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2598 tactgtctataaccatcaacttgcttaaatactaaaccgaaagacagcttacatattatg 2539
Query: 648 acagctgaagaggtcgatnaggaatcagatcctgcaatagaagatgttaaattcgattat 707
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2538 acagctgaagaggtcgataaggaatcagatcctgcaatagaagatgttaaatcggattat 2479
Query: 708 gacgcaatttgacttggggaatgagaatgagaatgagaatgaagttgtatcatttggatt 767
||||||||| |||| |||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 2478 gacgcaattgaactt-gggaatgagaatgagaatgagaatgaggttgtatca-ttggatt 2421
Query: 768 caatgaaggcagttatattcaaggctttctagcgagcttaagcacgaaaatgatcaaggt 827
|||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||
Sbjct: 2420 caatgaaggcagttatatccagggc-ttctagcgagcttaagcacgaaaatgatcaaggt 2362
Query: 828 gaggagcgtgattttgggtattgttga 854
||||||||||| |||||||| ||||||
Sbjct: 2361 gaggagcgtga-tttgggtagtgttga 2336
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7177
Number of Sequences: 1807
Number of extensions: 7177
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)