BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZD08RM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1199 1530 0.0
>3x_Contig1199
Length = 6044
Score = 1530 bits (772), Expect = 0.0
Identities = 847/869 (97%), Gaps = 3/869 (0%)
Strand = Plus / Minus
Query: 46 ccacgaatttagatacaaaagctactgtccagcagaagttgcaacagttgtacctttccg 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5721 ccacgaatttagatacaaaagctactgtccagcagaagttgcaacagttgtacctttccg 5662
Query: 106 ttgcaaaatcgcagatgagcgtaataatggtgaagtcggtgttaactaaagacgttaaga 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5661 ttgcaaaatcgcagatgagcgtaataatggtgaagtcggtgttaactaaagacgttaaga 5602
Query: 166 ccaatatgaagtttttgaagaatgaagaactgaaattatctcaagtattggatttgccta 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5601 ccaatatgaagtttttgaagaatgaagaactgaaattatctcaagtattggatttgccta 5542
Query: 226 tgtgttatggattgtatttgattgagttatacagagagcagctctggacagaccgttact 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5541 tgtgttatggattgtatttgattgagttatacagagagcagctctggacagaccgttact 5482
Query: 286 ctcaacttcgacaacaacatgaatcttcattgcagcatcttttggatgacgaagtacgac 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5481 ctcaacttcgacaacaacatgaatcttcattgcagcatcttttggatgacgaagtacgac 5422
Query: 346 aaagaaactcttggtacaaagatttccaatggataactcgatttctagatgttgatagtt 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5421 aaagaaactcttggtacaaagatttccaatggataactcgatttctagatgttgatagtt 5362
Query: 406 tgctaccatcatcagtatacattccgtccataagtgatcataaacaggtgacattgtctc 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5361 tgctaccatcatcagtatacattccgtccataagtgatcataaacaggtgacattgtctc 5302
Query: 466 agattaaagattatattaatcaacttgcttcattgaacttaggtgaacctacaattaatt 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5301 agattaaagattatattaatcaacttgcttcattgaacttaggtgaacctacaattaatt 5242
Query: 526 tacttaagtcaaaagtctcgcaggcggagctgacaggcttgcatttacctacagattacg 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5241 tacttaagtcaaaagtctcgcaggcggagctgacaggcttgcatttacctacagattacg 5182
Query: 586 cgctctcgaaagactcggagcttatcattgaaggatacaaggctcgtatcaaaaagctag 645
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5181 cgctctcgaaggactcggagcttatcattgaaggatacaaggctcgtatcaaaaagctag 5122
Query: 646 aacatttattacttgatgcacagttccatcagtacgactcatgcncagctggcattctga 705
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 5121 aacatttattacttgatgcacagttccatcagtacgactcatggccagctggcattctga 5062
Query: 706 ataaagaaactgcantggtccaaatgtttccgcattagtaccgtgagcacaaagttacag 765
|||| ||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 5061 ataaggaaactgcaatggtccaaatg-ttccgcaatagtaccgtgagcacaaagttacag 5003
Query: 766 ncaagttcaacattcgatctcccaatttcccaatcac-acacgaattcaataaaaccttc 824
||||||||||||||||||||||| |||| || || |||||||| ||||||||||||
Sbjct: 5002 caaagttcaacattcgatctcccaagttccaaacaacaacacgaatcaaataaaaccttc 4943
Query: 825 gaggattttc-aaacctgcataaggatataagcaaatactctgtattacccaggaccctt 883
||||| |||| ||||||||| |||||||||||||||||||||| |||| ||| |||||||
Sbjct: 4942 gaggaatttcaaaacctgcaaaaggatataagcaaatactctgaattaaccaagaccctt 4883
Query: 884 gaaactgaactttcaacacttaaaagtca 912
|||||||||||||||||||||||||||||
Sbjct: 4882 gaaactgaactttcaacacttaaaagtca 4854
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6163
Number of Sequences: 1807
Number of extensions: 6163
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)