BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZD09FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1508 1302 0.0
>3x_Contig1508
Length = 7899
Score = 1302 bits (657), Expect = 0.0
Identities = 779/812 (95%), Gaps = 6/812 (0%)
Strand = Plus / Plus
Query: 89 aaaagaacaacgatccaaatcgtgtgaaagcccgtgaaaagaaaggagaagtgttggtta 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6891 aaaagaacaacgatccaaatcgtgtgaaagcccgtgaaaagaaaggagaagtgttggtta 6950
Query: 149 ccctgagttcgtgatttgcaagggaaagaatcaaccaacgcttatcaagtcttctgtcat 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6951 ccctgagttcgtgatttgcaagggaaagaatcaaccaacgcttatcaagtcttctgtcat 7010
Query: 209 cggacagttttttattttacttctcgggtaagacattttcactgaactttccgattacat 268
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7011 cggacagttttctattttacttctcgggtaagacattttcactgaactttccgattacat 7070
Query: 269 tccccggtgggtcgtattcgcatactgtatattgaccgtaatactggccacatcgtataa 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7071 tccccggtgggtcgtattcgcatactgtatattgaccgtaatactggccacatcgtataa 7130
Query: 329 atgcacagccaagtttcgaggtatttttccataccagctgggtgaaatgtcctgtatttg 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7131 atgcacagccaagtttcgaggtatttttccataccagctgggtgaaatgtcctgtatttg 7190
Query: 389 ctgcgaactgtgggttgttaaaatcgtacagttttacctcgttataccatgctagaacag 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7191 ctgcgaactgtgggttgttaaaatcgtacagttttacctcgttataccatgctagaacag 7250
Query: 449 ctgaggtagtattatatcctagagcaaggttctctccgtaaggcagctttgagtgttcta 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7251 ctgaggtagtattatatcctagagcaaggttctctccgtaaggcagctttgagtgttcta 7310
Query: 509 attgcccgttgcatacgtaagaattggcgaaattttgtgctctagatgcaagttctggag 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7311 attgcccgttgcatacgtaagaattggcgaaattttgtgctctagatgcaagttctggag 7370
Query: 569 cccaaactagcgatgaaacctgatgttncttgcgtaatgagttgtgcacgtccaggaatt 628
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 7371 cccaaactagcgatgaaacctgatgtttcttgcgtaatgagttgtgcacgtccaggattt 7430
Query: 629 ccgttttgaaatccgggtccgtggccgttggttttgtggacacttgttccgtgaaggtgc 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7431 ccgttttgaaatccgggtccgtggccgttggttttgtggacacttgttccgtgaaggtgc 7490
Query: 689 cggaggctgttcttgtaacaattgttcttgaag-tgtgaaatgtgttgtcgttgagccgg 747
||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 7491 cggaggctgttctgtaaacaattgttcttgaagttgtgaaatgtgttgtcgttgagacgg 7550
Query: 748 -tttcgtttctattattccaacag-ggtgtattttggcactgtgataccctgtgctggac 805
||||||| |||||||| ||||| | ||||||||| |||||| ||||||||||| |||
Sbjct: 7551 ttttcgttcttattattcgaacagtgttgtattttgtcactgttataccctgtgcatgac 7610
Query: 806 a-aagtattttgcgtggatta-caccacccatatgatcccttaaacctgattcatttggc 863
| ||| |||||||||||||| |||||| |||||| || |||||||||||||||||||
Sbjct: 7611 acaagatttttgcgtggattagtaccaccaatatgagccagtaaacctgattcatttggc 7670
Query: 864 agggggttgctctttctccgtattttatctat 895
| || |||||||| | |||| | |||||||||
Sbjct: 7671 a-ggtgttgctctatttccgaagtttatctat 7701
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5142
Number of Sequences: 1807
Number of extensions: 5142
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)