BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZD10FM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1460 1505 0.0
>3x_Contig1460
Length = 9157
Score = 1505 bits (759), Expect = 0.0
Identities = 799/812 (98%), Gaps = 1/812 (0%)
Strand = Plus / Plus
Query: 90 cagaacagatgctagtgatgagtttttcaagacattatttgcgcagttggaaggtgcagc 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5996 cagaacagatgctagtgatgagtttttcaagacattatttgcgcagttggaaggtgcagc 6055
Query: 150 tccaatgaagagagaatttggttggggtgatattaaggctaaagagtgtgatatggggga 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6056 tccaatgaagagagaatttggttggggtgatattaaggctaaagagtgtgatatggggga 6115
Query: 210 cgttgttttctanttcaatggtcgtgatgagaggttaagttatgataatttggccaaatg 269
||||| ||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6116 cgttggattcgattccaatggtcgtgatgagaggttaagttatgataatttggccaaatg 6175
Query: 270 tttgcaattacccgagagtaactataactctttgaagaatggccatgagaaatttgttaa 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6176 tttgcaattacccgagagtaactataactctttgaagaatggccatgagaaatttgttaa 6235
Query: 330 atacttgagtacagttgatacaagtgcaagtcagttggaacaaatctatgcaactaagag 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6236 atacttgagtacagttgatacaagtgcaagtcagttggaacaaatctatgcaactaagag 6295
Query: 390 agggattgttaccgtgggtggacgtaggtactcattgctttcatatttgatgatcaatat 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6296 agggattgttaccgtgggtggacgtaggtactcattgctttcatatttgatgatcaatat 6355
Query: 450 ggtgagaagaagtggcagtaaactaccgattgaagttgtcattcctccagatgacgaacc 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6356 ggtgagaagaagtggcagtaaactaccgattgaagttgtcattcctccagatgacgaacc 6415
Query: 510 cgagaccgagttttgtgaatcgatcttgcaatttaacgctagatgtatttatttcaagga 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6416 cgagaccgagttttgtgaatcgatcttgcaatttaacgctagatgtatttatttcaagga 6475
Query: 570 tagattaccaacctcgctattggcaaacttgagtgtgaaatcttatcaggtgaaaggtat 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6476 tagattaccaacctcgctattggcaaacttgagtgtgaaatcttatcaggtgaaaggtat 6535
Query: 630 agccttgttactttcatcttttcaggaatttgtccttatcgattccgataacatgccatt 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6536 agccttgttactttcatcttttcaggaatttgtccttatcgattccgataacatgccatt 6595
Query: 690 gaaaaacatcgatgaggtgttcgattataacgtattcagggatcatggtatggttatttg 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6596 gaaaaacatcgatgaggtgttcgattataacgtattcagggatcatggtatggttatttg 6655
Query: 750 gccagatatttggagaaagatgacatctncacaattctaccaattggcagaggttccgat 809
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 6656 gccagatatttggagaagaatgacatctccacaattctaccaattggcagaggttccgat 6715
Query: 810 cgattttactaaacgtgtgcgtaatgcangtgatgagttatcttcagtatctcgttatga 869
|||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 6716 cgatttcactaaacgtgtgcgtaatgcaggtgatgagttatctccagtatctcgttatga 6775
Query: 870 caagctagaaaacacagttagttgaaaacaag 901
|||||||||||||||||| || ||||||||||
Sbjct: 6776 caagctagaaaacacagtaag-tgaaaacaag 6806
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5821
Number of Sequences: 1807
Number of extensions: 5821
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)