BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZD10RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1349 993 0.0
>3x_Contig1349
Length = 5890
Score = 993 bits (501), Expect = 0.0
Identities = 657/700 (93%), Gaps = 8/700 (1%)
Strand = Plus / Plus
Query: 48 ttctttaccatttttctcaacagtaccattatcactactcatagctgtttattcactgtt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2788 ttctttaccatttttctcaacagtaccattatcactactcatagctgtttattcactgtt 2847
Query: 108 gctccggtacctggtattaaagttctaaagcggtgttaatagcctttccactgtttaact 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2848 gctccggtacctggtattaaagttctaaagcggtgttaatagcctttccactgtttaact 2907
Query: 168 ttgatatgttcgtctttcactgtactatgtcgacgactctggctttactttcattactag 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2908 ttgatatgttcgtctttcactgtactatgtcgacgactctggctttactttcattactag 2967
Query: 228 ttgatatacgtaaatatatatcgcttttcccggaatactgagtttgaaataaagaaggaa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2968 ttgatatacgtaaatatatatcgcttttcccggaatactgagtttgaaataaagaaggaa 3027
Query: 288 agctgtcacagtaacgttttatttagctgcatttttcaagtttcaccagtaaggtagtta 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3028 agctgtcacagtaacgttttatttagctgcatttttcaagtttcaccagtaaggtagtta 3087
Query: 348 actaaatcaaaagttgacttaatcatatttaagttattatttttttttttttttgacttt 407
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 3088 actaaatcaaaagttgacttaatcatatttaggttatta-ttttttttttttttgacttt 3146
Query: 408 gatgatattcatgaaaagtagagatggccccgtctgttggaatggaaaaacaagaagttg 467
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 3147 gatgatattcatgaaaagtagagatgg-cccgtctgttggaatggaaaaacaagaagttg 3205
Query: 468 aggttgaagtcccgaacaactaagagagagacatagaacgacatataccttggttaattg 527
||| |||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 3206 agg-tgaagtccggaacaactaagagagagacatagaacgacatatacctgggtaaattg 3264
Query: 528 aaagaaagcaaaaacgct--aaaaaaaaaattattagtgattaagtagggaaaggttaga 585
|||||| ||||||||||| ||||||||||||||||||||| | |||||| |||||||
Sbjct: 3265 aaagaaggcaaaaacgctaaaaaaaaaaaattattagtgataaggtaggg-aaggttaag 3323
Query: 586 atctttttttctaaccctttcctacagtaactttggcagcaaatttcaacaaaaaagtta 645
|| ||||||| | ||| ||||||||||||| || ||||||||||| |||||| ||||
Sbjct: 3324 attcttttttcgtagcctctcctacagtaactctgcgagcaaatttcagcaaaaaggtta 3383
Query: 646 cctctaaacttgccggaac-acctacaatcaattgagtggaatccgggatttttttttgg 704
|||||||||| ||||||| || ||| ||| | ||||||||||| ||| ||| |||| |
Sbjct: 3384 cctctaaactgtccggaacaacatacgatctaatgagtggaatcgcggaatttcttttcg 3443
Query: 705 gaacccctgcaccggaaaaatt-atggtcccattgggttt 743
| ||||||||| ||||| |||| |||||||||| ||||||
Sbjct: 3444 ggacccctgcaacggaagaattaatggtcccatcgggttt 3483
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,575
Number of Sequences: 1807
Number of extensions: 18575
Number of successful extensions: 2322
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)