BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZD11FM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1192 1586 0.0
>3x_Contig1192
Length = 5015
Score = 1586 bits (800), Expect = 0.0
Identities = 860/871 (98%), Gaps = 7/871 (0%)
Strand = Plus / Minus
Query: 85 aatgactgtaccgaatttcaaccgacattgagggtaggcaatgtggaacttaatctcaaa 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3304 aatgactgtaccgaatttcaaccgacattgagggtaggcaatgtggaacttaatctcaaa 3245
Query: 145 gacggggggtctggctctattgaagttgataaaccaaagagttcataccatccatttcac 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3244 gacggggggtctggctctattgaagttgataaaccaaagagttcataccatccatttcac 3185
Query: 205 agctatattctaa-tgntatggagaatgtacaaaattatgactcggatgatgactttgat 263
|||||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3184 agctatattcaaaatgtgatggagaatgtacaaaattatgactcggatgatgactttgat 3125
Query: 264 gagaatggaaatgacgttgaacagagttttagtataagttcagattatgaatttgaatcc 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3124 gagaatggaaatgacgttgaacagagttttagtataagttcagattatgaatttgaatcc 3065
Query: 324 tcggaggaactaataacaacaggtggtacgatcgaacagtttgatagttcaatgaagtcg 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3064 tcggaggaactaataacaacaggtggtacgatcgaacagtttgatagttcaatgaagtcg 3005
Query: 384 ttaacaattgaagaaattcccgggaaaacaatcactgcatcacttacaacaaaagatata 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3004 ttaacaattgaagaaattcccgggaaaacaatcactgcatcacttacaacaaaagatata 2945
Query: 444 tcacaaggaaattctgataatagctctggcgatgaatcatttggattctgtgaggatgat 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2944 tcacaaggaaattctgataatagctctggcgatgaatcatttggattctgtgaggatgat 2885
Query: 504 tttgaaggttcgataggaaaagtgtttgtttccaatattcgaatcggagctgggactcat 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2884 tttgaaggttcgataggaaaagtgtttgtttccaatattcgaatcggagctgggactcat 2825
Query: 564 tcttatcatgtctcatgtcatgaaatatacggagatagtgagcctagatgggtagatgat 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2824 tcttatcatgtctcatgtcatgaaatatacggagatagtgagcctagatgggtagatgat 2765
Query: 624 gaaatgatgaatgaaataattgccgaaatgggcttacctgaacaccgatttagagcttat 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2764 gaaatgatgaatgaaataattgccgaaatgggcttacctgaacaccgatttagagcttat 2705
Query: 684 tacaaacatctacacaagtcattcattgaagaagaggaagagccagaggaatatgctgat 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2704 tacaaacatctacacaagtcattcattgaagaagaggaagagccagaggaatatgctgat 2645
Query: 744 atcccctttgatgatgatgacagtgatgattctactgcggatcaatgcgaacctttcgcc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2644 atcccctttgatgatgatgacagtgatgattctactgcggatcaatgcgaacctttcgcc 2585
Query: 804 gaagatgaatctc-gtgaagatcttgatgatctcgtgtcttacgctct-aaatacaataa 861
||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2584 gaagatg-atctcggtgaagatcttgatgatctcgtgtcttacgctctaaaatacaataa 2526
Query: 862 gcagcgaaaaattgaataccatactacttcattggatataagggggaaaggaagaaac-a 920
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 2525 gcagcgaaaaattgaataccatactacttcattggatattagggggaaaggaagaaacaa 2466
Query: 921 gcattt-atattcgatcaaac-gcaggaatg 949
|||||| |||||||||||||| |||||||||
Sbjct: 2465 gcatttaatattcgatcaaacagcaggaatg 2435
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8280
Number of Sequences: 1807
Number of extensions: 8280
Number of successful extensions: 94
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)