BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZD11RM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig178 997 0.0
3x_Contig1092 827 0.0
3x_Contig1805 202 9e-52
3x_Contig1773 113 6e-25
3x_Contig1213 113 6e-25
>3x_Contig178
Length = 1315
Score = 997 bits (503), Expect = 0.0
Identities = 602/623 (96%), Gaps = 9/623 (1%)
Strand = Plus / Minus
Query: 46 tatgttagagctccctgca-gt-tgaaat-tggtcc-caagtccggtgcgtactgttaag 101
||||||||||||||||||| || |||||| |||||| |||||||||||||||||||||||
Sbjct: 847 tatgttagagctccctgcaagtatgaaatatggtccacaagtccggtgcgtactgttaag 788
Query: 102 atctgtatttggcgcagaagcattgtaaattggtggagatatatccatcgactcagggag 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 atctgtatttggcgcagaagcattgtaaattggtggagatatatccatcgactcagggag 728
Query: 162 ccaatcatcactcggatgtctgctaccccagctgcggccacagcgtatggcatcacctaa 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 ccaatcatcactcggatgtctgctaccccagctgcggccacagcgtatggcatcacctaa 668
Query: 222 tgtagtgcttgaatctattggtagcacatactgttcagtgcaaaataatgttggtccacc 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tgtagtgcttgaatctattggtagcacatactgttcagtgcaaaataatgttggtccacc 608
Query: 282 aacttccagtgacattgttgactactttctgtgatttaacacaagttgttggacagcata 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 aacttccagtgacattgttgactactttctgtgatttaacacaagttgttggacagcata 548
Query: 342 atattatgaaggatatatgatcaaattgtaccattatcgagcacttgtgataaataaata 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 atattatgaaggatatatgatcaaattgtaccattatcgagcacttgtgataaataaata 488
Query: 402 cacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgttgcatctattg-a 460
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 487 cacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgttgcatctattgca 428
Query: 461 acagagataagcagag-acgtaacgagataattaatcttcaatgcgacttagtcaaaact 519
||| | ||||||| || || |||| | | |||||||||||||||| ||||||||||||||
Sbjct: 427 acacacataagcacagcacctaaccacaaaattaatcttcaatgccacttagtcaaaact 368
Query: 520 gtatcagattctgttgttctctggcgttgtaagagccctttct-atgcgccagttattga 578
||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||
Sbjct: 367 gtatcagattctgttgttctctggcgttgtaggag-cctttctaatgcgccagttattga 309
Query: 579 accaatg-ctaaatacgaagctgagctgagaggaactatgatcagcatcaaggctacagc 637
||||||| ||||||||| ||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 308 accaatgcctaaatacgcagctgagctgagaggcactaggatcagcatcaaggctacagc 249
Query: 638 acccagtatttgaacatcagatg 660
|||||||||||||||||||||||
Sbjct: 248 acccagtatttgaacatcagatg 226
>3x_Contig1092
Length = 2520
Score = 827 bits (417), Expect = 0.0
Identities = 472/485 (97%), Gaps = 4/485 (0%)
Strand = Plus / Plus
Query: 46 tatgttagagctccctgca-gt-tgaaat-tggtcc-caagtccggtgcgtactgttaag 101
||||||||||||||||||| || |||||| |||||| |||||| ||||||||||||||||
Sbjct: 243 tatgttagagctccctgcaagtatgaaatatggtccacaagtctggtgcgtactgttaag 302
Query: 102 atctgtatttggcgcagaagcattgtaaattggtggagatatatccatcgactcagggag 161
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 atctgtatttggtgcagaagcattgtaaattggtggagatatatccatcgactcagggag 362
Query: 162 ccaatcatcactcggatgtctgctaccccagctgcggccacagcgtatggcatcacctaa 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ccaatcatcactcggatgtctgctaccccagctgcggccacagcgtatggcatcacctaa 422
Query: 222 tgtagtgcttgaatctattggtagcacatactgttcagtgcaaaataatgttggtccacc 281
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tgtagtgcttgaatcgattggtagcacatactgttcagtgcaaaataatgttggtccacc 482
Query: 282 aacttccagtgacattgttgactactttctgtgatttaacacaagttgttggacagcata 341
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 483 aacttctagtgacattgttgactactttctgtgatttaacacaacttgttggacagcatg 542
Query: 342 atattatgaaggatatatgatcaaattgtaccattatcgagcacttgtgataaataaata 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 atattatgaaggatatatgatcaaattgtaccattatcgagcacttgtgataaataaata 602
Query: 402 cacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgttgcatctattgaa 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 cacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgttgcatctattgaa 662
Query: 462 cagagataagcagagacgtaacgagataattaatcttcaatgcgacttagtcaaaactgt 521
||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 663 cagagataagcagaggcgtaacgagaaaattaatcttcaatgggacttagtcaaaactgt 722
Query: 522 atcag 526
|||||
Sbjct: 723 atcag 727
>3x_Contig1805
Length = 19369
Score = 202 bits (102), Expect = 9e-52
Identities = 185/206 (89%), Gaps = 5/206 (2%)
Strand = Plus / Minus
Query: 576 tgaaccaatgctaaatacgaagctgagctgagaggaactatgatcagcatcaaggctaca 635
||||||||||||||||| |||| ||||||||||| ||||| |||||||||||||||||||
Sbjct: 16928 tgaaccaatgctaaataagaagttgagctgagagcaactaggatcagcatcaaggctaca 16869
Query: 636 gcacccagtatttgaacatcagatgtaaccaggatattaagtagaaagttctttcattca 695
||||||||||||||||||||||||||||| || ||| ||||||| |||||| |||| ||
Sbjct: 16868 gcacccagtatttgaacatcagatgtaacaagtata-taagtag-aagttccttca-tcc 16812
Query: 696 aaggagaacaccggaaaggtattttcctaattactccgaagttcggatacttgccaccaa 755
|||||||||||| | ||| |||||||||||||||| |||||||| ||||| ||||||||
Sbjct: 16811 aaggagaacacc-gtaagtaattttcctaattactcggaagttcgtatactggccaccaa 16753
Query: 756 taccttatctattatttattatcagc 781
|| | ||||||||| |||||||||||
Sbjct: 16752 ta-catatctattaattattatcagc 16728
>3x_Contig1773
Length = 8694
Score = 113 bits (57), Expect = 6e-25
Identities = 76/81 (93%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 584 tgctaaatacgaagctgagctgagaggaactatgatcagcatcaaggctacagcacccag 643
||||||||| |||||||||||||||| ||||| |||||||||||||||||||||| |||
Sbjct: 8525 tgctaaataagaagctgagctgagagcaactaggatcagcatcaaggctacagca-ccat 8583
Query: 644 tatttgaacatcagatgtaac 664
|||||||||||||||||||||
Sbjct: 8584 tatttgaacatcagatgtaac 8604
>3x_Contig1213
Length = 3226
Score = 113 bits (57), Expect = 6e-25
Identities = 76/81 (93%), Gaps = 1/81 (1%)
Strand = Plus / Minus
Query: 584 tgctaaatacgaagctgagctgagaggaactatgatcagcatcaaggctacagcacccag 643
||||||||| |||||||||||||||| ||||| |||||||||||||||||||||| |||
Sbjct: 173 tgctaaataagaagctgagctgagagcaactaggatcagcatcaaggctacagca-ccat 115
Query: 644 tatttgaacatcagatgtaac 664
|||||||||||||||||||||
Sbjct: 114 tatttgaacatcagatgtaac 94
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7052
Number of Sequences: 1807
Number of extensions: 7052
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 5
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)