BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZD12FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig454 1322 0.0
3x_Contig950 230 4e-60
>3x_Contig454
Length = 2260
Score = 1322 bits (667), Expect = 0.0
Identities = 724/741 (97%), Gaps = 2/741 (0%)
Strand = Plus / Minus
Query: 172 gtaatattattgttgaagacgaagataaggttatcactaattccgttttggagtctttga 231
||||||||||||||||||| |||||||||||||| | ||||| | |||||||| |||||
Sbjct: 2001 gtaatattattgttgaagaagaagataaggttataaataattaagatttggagtatttga 1942
Query: 232 ttagagagcatcaatcgttcattgacaaaataaactctattaaatgctgtgacataatta 291
|||||||| || ||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1941 ttagagagaataaatagttaattgacaaaataaactctattaaatgctgtgacataatta 1882
Query: 292 acccattagttgatatattctatcagagtccagaagccgttcgcgcaacctgggtaaatg 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1881 acccattagttgatatattctatcagagtccagaagccgttcgcgcaacctgggtaaatg 1822
Query: 352 tgttccctgttgcttataaatcgataccgaggaatgaaaagtacggctttgtaagatcat 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1821 tgttccctgttgcttataaatcgataccgaggaatgaaaagtacggctttgtaagatcat 1762
Query: 412 tggtcgctcttctatctaaagattatcataccaaacaggcgtcaatacatgttaatgtca 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1761 tggtcgctcttctatctaaagattatcataccaaacaggcgtcaatacatgttaatgtca 1702
Query: 472 taagtacaatgttagaatcggtaagcaaaattgaatcgttagaacttccacctcatctag 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1701 taagtacaatgttagaatcggtaagcaaaattgaatcgttagaacttccacctcatctag 1642
Query: 532 taagatatttgggaattacgttcaatgcatggtatcaatcaatcgacttacttgaacaga 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1641 taagatatttgggaattacgttcaatgcatggtatcaatcaatcgacttacttgaacaga 1582
Query: 592 ttcaagaaacatccaatatcgataatagtaaaattctagatacaaacgaagatgctttgc 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1581 ttcaagaaacatccaatatcgataatagtaaaattctagatacaaacgaagatgctttgc 1522
Query: 652 ttgagttatactcgagtatacaagaagacgatatgttctatggattatggagaagaaagg 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1521 ttgagttatactcgagtatacaagaagacgatatgttctatggattatggagaagaaagg 1462
Query: 712 caaagtacacagaatctagcatagctttatcgtatgaacaaatcggtttatgggataaag 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1461 caaagtacacagaatctagcatagctttatcgtatgaacaaatcggtttatgggataaag 1402
Query: 772 cacagcaaatgtatgaagctgctcaagtcaaggccagaagcggctntttgccctattctg 831
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 1401 cacagcaaatgtatgaagctgctcaagtcaaggccagaggcggctttttgccctattctg 1342
Query: 832 agtcagaatatgaactatgggaagataactggatccttttgngccagtaaattgcagcac 891
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 1341 agtcagaatatgaactatgggaagataactggatcc-tttgtgccagtaaattgcagcac 1283
Query: 892 tggggatatccttaccgagtt 912
| |||||||||| ||||||||
Sbjct: 1282 t-gggatatcctcaccgagtt 1263
>3x_Contig950
Length = 3159
Score = 230 bits (116), Expect = 4e-60
Identities = 160/168 (95%), Gaps = 5/168 (2%)
Strand = Plus / Minus
Query: 86 ccagttacttttcggagcatgtgtcatggaacatagaattaaactcactgagcacttccc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 ccagttacttttcggagcatgtgtcatggaacatagaattaaactcactgagcacttccc 104
Query: 146 actatctccactaagcgctattgttcgtaatattattgttgaagacgaagataaggttat 205
||||||||||||||||||||||| ||| |||||||||||||||||| |||||||| |||
Sbjct: 103 actatctccactaagcgctattgaacgt-atattattgttgaagacg-agataagg-tat 47
Query: 206 cactaattccgttttggagtctttgattagagagcatcaatcgttcat 253
||||||||||| ||||||||| |||||||||||| |||||||||||||
Sbjct: 46 cactaattccgctttggagtc-ttgattagagag-atcaatcgttcat 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5606
Number of Sequences: 1807
Number of extensions: 5606
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 2
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)