BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZD12RM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1718 1316 0.0
>3x_Contig1718
Length = 19496
Score = 1316 bits (664), Expect = 0.0
Identities = 750/772 (97%), Gaps = 5/772 (0%)
Strand = Plus / Plus
Query: 54 ctttactataagatctgagtacactttgctgttgcctggtacaatcgcatttctaaagat 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2278 ctttactataagatctgagtacactttgctgttgcctggtacaatcgcatttctaaagat 2337
Query: 114 gcctggcggtttgaaatataaggtcgatattgactccgcggattttgatatctgatccag 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2338 gcctggcggtttgaaatataaggtcgatattgactccgcggattttgatatctgatccag 2397
Query: 174 gcagtaatctaatgatccagacatcctttgatgttgttaaaaaacactacacgtacagat 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2398 gcagtaatctaatgatccagacatcctttgatgttgttaaaaaacactacacgtacagat 2457
Query: 234 taggcaccaccctctttcaggaaactgctatggaatacaatatttcatccaatactatgt 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2458 taggcaccaccctctttcaggaaactgctatggaatacaatatttcatccaatactatgt 2517
Query: 294 aatttcttgaaatactccaaatgattcatttatcttttaactcgattatgtttacatttt 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2518 aatttcttgaaatactccaaatgattcatttatcttttaactcgattatgtttacatttt 2577
Query: 354 agtttttttgttttcggtgtttacgaaatctttacgtgaaaagagttggcattatgttaa 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2578 agtttttttgttttcggtgtttacgaaatctttacgtgaaaagagttggcattatgttaa 2637
Query: 414 tggaaaaggttgacagaagacttttaaggctcatgcggcctttacatcggggtaagctaa 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2638 tggaaaaggttgacagaagacttttaaggctcatgcggcctttacatcggggtaagctaa 2697
Query: 474 gcgagaactattgcttactttattctatatatgatgataaataaacaagataatcggaat 533
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 2698 gcgagaactattgcttactttattctatatatgatgataaataaacaagaaaatcagaat 2757
Query: 534 tggctattattattctctccatgcgatataaacctcatcggttctaaacttctgcgtgac 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2758 tggctattattattctctccatgcgatataaacctcatcggttctaaacttctgcgtgac 2817
Query: 594 aatggtttcagatagatccttaacatagtggcctgttctgtactctaataggcctgcctg 653
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2818 aatggtttcagaaagatccttaacaaagtggcctgttctgtactctaataggcctgcctg 2877
Query: 654 ggcattcat-acaccattatcaatacagaatctgtcatcagttgcgtgtacttgtccatt 712
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2878 ggcaatcatcacaccattatcaatacagaatctgtcatcagttgcgtgtacttgtccatt 2937
Query: 713 ggacctgtc-ttacacatttgggccataatctcttgaaccctaac-ttgcattc-acacc 769
||||||||| ||||||||||||||||| |||||||||| |||||| |||||| | |||||
Sbjct: 2938 ggacctgtctttacacatttgggccatcatctcttgaagcctaacgttgcatccaacacc 2997
Query: 770 accca-ttttatcacttgggttgaagtttcatggggcattggaccttcggta 820
||||| | ||| ||||||| |||| || |||||| ||||| || |||||||
Sbjct: 2998 acccactattagcacttggtttgagtttacatgggccattgcacgttcggta 3049
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8175
Number of Sequences: 1807
Number of extensions: 8175
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)