BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZE01FM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1799 1584 0.0
>3x_Contig1799
Length = 39855
Score = 1584 bits (799), Expect = 0.0
Identities = 823/827 (99%), Gaps = 3/827 (0%)
Strand = Plus / Plus
Query: 85 tgcttgaagaaagttttgttacaaatcaaccagtggttgttattgggaaacctagttcta 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2728 tgcttgaagaaagttttgttacaaatcaaccagtggttgttattgggaaacctagttcta 2787
Query: 145 agctcaatgaaaaactggaaaatgaaaatgactccaggatgaaagaaagagcgaagttat 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2788 agctcaatgaaaaactggaaaatgaaaatgactccaggatgaaagaaagagcgaagttat 2847
Query: 205 ttgatgacgctaaaagaaaggccctaaaagaaagcctctctcaggctcagcacaacaaca 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2848 ttgatgacgctaaaagaaaggccctaaaagaaagcctctctcaggctcagcacaacaaca 2907
Query: 265 atgttcaaattcctgatgacgttttgggatcatttgaaattgaaaacccgcaagactctg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2908 atgttcaaattcctgatgacgttttgggatcatttgaaattgaaaacccgcaagactctg 2967
Query: 325 tttatttcaccgaaactaagagtatttcatgtattcctgttccatccaatgatagtgatt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2968 tttatttcaccgaaactaagagtatttcatgtattcctgttccatccaatgatagtgatt 3027
Query: 385 tccctttgactgataatatcattaatttgaaaccaaaagctttcccttttttcattcatt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3028 tccctttgactgataatatcattaatttgaaaccaaaagctttcccttttttcattcatt 3087
Query: 445 tcgagcactttccatctcaatttgttgaaatacatgtagcattaaatgttgattttgtta 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3088 tcgagcactttccatctcaatttgttgaaatacatgtagcattaaatgttgattttgtta 3147
Query: 505 aagactgtgaactactgccatattatcatgtcgtaacagaactattttccatgccaatga 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3148 aagactgtgaactactgccatattatcatgtcgtaacagaactattttccatgccaatga 3207
Query: 565 taggggagaatggtgaaaccatttctttcgaggatgtggtagctcagttaaaaactgaaa 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3208 taggggagaatggtgaaaccatttctttcgaggatgtggtagctcagttaaaaactgaaa 3267
Query: 625 ctgttgaaactgacataagtatggggatcggtggaaatttttccaacttaattgacttca 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3268 ctgttgaaactgacataagtatggggatcggtggaaatttttccaacttaattgacttca 3327
Query: 685 agattcaatgcaaagctacaaattactcgaaagcggtgaattggctcaaaagagttttat 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3328 agattcaatgcaaagctacaaattactcgaaagcggtgaattggctcaaaagagttttat 3387
Query: 745 ttgattctgtatttgatgaaagcagggtttcaattcttttagagaagttttacaactcaa 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3388 ttgattctgtatttgatgaaagcagggtttcaattcttttagagaagttttacaactcaa 3447
Query: 805 tcgttgaaactaaaagggaaggtgatcaaatngatgttttcttctatgaatagacattta 864
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 3448 tcgttgaaactaaaagggaaggtgatcaaat-gatgttttcttctatgaatagacattta 3506
Query: 865 taccatgaggggatcgttaaagaaatctgcccgatgaattgtacgtt 911
||| |||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 3507 tacaatga-gggatcgttaaagaaatctg-ccgatgaattgtacgtt 3551
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8742
Number of Sequences: 1807
Number of extensions: 8742
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)