BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZE01RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1643 1082 0.0
>3x_Contig1643
Length = 10865
Score = 1082 bits (546), Expect = 0.0
Identities = 601/614 (97%), Gaps = 4/614 (0%)
Strand = Plus / Plus
Query: 48 cagatgcttttcgtttgactacaggaagaggtgatattctgttccaataatattcaattg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1698 cagatgcttttcgtttgactacaggaagaggtgatattctgttccaataatattcaattg 1757
Query: 108 tccaatcatttactggaaatatgtacattgttaatcatagaagtataccaaatcatttta 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1758 tccaatcatttactggaaatatgtacattgttaatcatagaagtataccaaatcatttta 1817
Query: 168 ttcgcatgcgaagactcttccaatacaagcacttatcaggacacacttcgcatgatcttc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1818 ttcgcatgcgaagactcttccaatacaagcacttatcaggacacacttcgcatgatcttc 1877
Query: 228 tccataagttggtgtgttgatgtggttgaccttttatttttttcttccttgattctcccc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1878 tccataagttggtgtgttgatgtggttgaccttttatttttttcttccttgattctcccc 1937
Query: 288 tcatcgctattaaatgcctatagagaaataaaagatgagattttccggaattaaacttct 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1938 tcatcgctattaaatgcctatagagaaataaaagatgagattttccggaattaaacttct 1997
Query: 348 aaagcacgagaaagcccttttctgctatggctggttctatgtattatataccgaaagaag 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1998 aaagcacgagaaagcccttttctgctatggctggttctatgtattatataccgaaagaag 2057
Query: 408 acataaatctaaacatcatcaacagtttaaagaagcttgaatagcaaaccggacttgaat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2058 acataaatctaaacatcatcaacagtttaaagaagcttgaatagcaaaccggacttgaat 2117
Query: 468 caagcctttaatttaatcaacagagcagtactttatactctttcgtttgcgtctaccgaa 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2118 caagcctttaatttaatcaacagagcagtactttatactctttcgtttgcgtctaccgaa 2177
Query: 528 ctggaatcaatgttctttgaaagcatttcggtgcggtggagcctcttttttttcatta-t 586
||||||||||||||||||||||||||||||||||| | ||| |||||||||||| || |
Sbjct: 2178 ctggaatcaatgttctttgaaagcatttcggtgcgtggtagcttcttttttttcaatatt 2237
Query: 587 tttcacactaagcagcttttact-tggga-gatgaatatcaaccaa-tctgaaaattttt 643
||||||||||||||||||||||| ||||| ||||||||||||| || |||||| ||||||
Sbjct: 2238 tttcacactaagcagcttttactatgggatgatgaatatcaacaaattctgaatattttt 2297
Query: 644 atctttaaatatcg 657
|||| || ||||||
Sbjct: 2298 atctatagatatcg 2311
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9206
Number of Sequences: 1807
Number of extensions: 9206
Number of successful extensions: 90
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)