BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZE03RM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1639 1120 0.0
>3x_Contig1639
Length = 14140
Score = 1120 bits (565), Expect = 0.0
Identities = 718/751 (95%), Gaps = 15/751 (1%)
Strand = Plus / Minus
Query: 48 cggcatatgcttcctatacgcgacaacggaatgttggtaattctatgtcaggcggtcatg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8843 cggcatatgcttcctatacgcgacaacggaatgttggtaattctatgtcaggcggtcatg 8784
Query: 108 ttaagggtgttaagaaagcagctttttttttagcgctaagactaagaggcagtttttgtc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8783 ttaagggtgttaagaaagcagctttttttttagcgctaagactaagaggcagtttttgtc 8724
Query: 168 tggccggaaaaatgtttatcacgcttttacggtgacgaatacggataaatcagcgatcta 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8723 tggccggaaaaatgtttatcacgcttttacggtgacgaatacggataaatcagcgatcta 8664
Query: 228 ctactttgaaatatgagtcgttgatcagcatagaagatgttgtggcttggcacaggaatg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8663 ctactttgaaatatgagtcgttgatcagcatagaagatgttgtggcttggcacaggaatg 8604
Query: 288 tctatttcacctagtatctacctcagttgaattggcactataaacatttcagcctttttg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8603 tctatttcacctagtatctacctcagttgaattggcactataaacatttcagcctttttg 8544
Query: 348 aagaaagaagtgtcactagtatcaacttcgatcgaacttaactgcaggaactacaaatat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8543 aagaaagaagtgtcactagtatcaacttcgatcgaacttaactgcaggaactacaaatat 8484
Query: 408 tgagaaaatatagctagtggtcagttgttgaatttacctcagcgaccattttcctgtcat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8483 tgagaaaatatagctagtggtcagttgttgaatttacctcagcgaccattttcctgtcat 8424
Query: 468 gtcatgaaatgttcgatagatcaaacgatgaaatctttaaagctgtcaaaatccgcgaag 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8423 gtcatgaaatgttcgatagatcaaacgatgaaatctttaaagctgtcaaaatccgcgaag 8364
Query: 528 aa-tttaagaantagc-atgagatgcgaaagttactttctcagccttgctgtttcttcat 585
|| |||||||| ||| ||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 8363 aattttaagaaa-agcaatgagatgcgaaagtaactttctcagccttgctgttccttcat 8305
Query: 586 agcctat-ccaaactgcagatcatgtttgcc-aatacaaat-atcacacgtttgac-ttc 641
||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||| |||
Sbjct: 8304 agcctatgccaaactgcagatcatgtttgccaaatacaaataatcacacgtttgacattc 8245
Query: 642 aaaaa-ctattttaagcg-aaaactcttttttagaa--ccatgtcaaagaaagggat-tt 696
||||| |||||||||||| ||||||||||| ||||| ||||||||||||| |||| |
Sbjct: 8244 aaaaacctattttaagcgaaaaactcttttctagaaacacatgtcaaagaaatggatatc 8185
Query: 697 ttggcctaacattccccttcggaaatgtacttcgatgattaaaaccttggtcgaaaccag 756
||| |||||| | ||||||| |||||||| ||||||| |||||| ||| ||||| ||||
Sbjct: 8184 ttgcactaacacttcccttcgtaaatgtac-tcgatgaataaaactttgttcgaagccag 8126
Query: 757 ctggcttcttctggttacttttatgcaatga 787
|| ||||||||| | |||| |||||||||||
Sbjct: 8125 ct-gcttcttct-gctactattatgcaatga 8097
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6736
Number of Sequences: 1807
Number of extensions: 6736
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)