BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZE04RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1794 1316 0.0
>3x_Contig1794
Length = 36744
Score = 1316 bits (664), Expect = 0.0
Identities = 735/748 (98%), Gaps = 8/748 (1%)
Strand = Plus / Plus
Query: 52 gctttaatcgagtttggattttctacgagacaacaccctattggaatcatccatggttta 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31344 gctttaatcgagtttggattttctacgagacaacaccctattggaatcatccatggttta 31403
Query: 112 taaatgtcaatattaccgtagaaattagtagggattttaccatcagcatccacttgctta 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31404 taaatgtcaatattaccgtagaaattagtagggattttaccatcagcatccacttgctta 31463
Query: 172 ggaataacatactcagtctgaccaatggggtaaagcctctcttcatcttcgtcttcttcg 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31464 ggaataacatactcagtctgaccaatggggtaaagcctctcttcatcttcgtcttcttcg 31523
Query: 232 acaggattctttattttgtgtgtcaaaagatgcttggcacccgacttcaatgctcttcct 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31524 acaggattctttattttgtgtgtcaaaagatgcttggcacccgacttcaatgctcttcct 31583
Query: 292 tgcatgtaccagtgcctagcactgtaacaagatattacatctttccttggaaaaactttg 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31584 tgcatgtaccagtgcctagcactgtaacaagatattacatctttccttggaaaaactttg 31643
Query: 352 agaagggagtttgatttattacgaagtcgaaggaagccgcactgctgagcacccggtttc 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31644 agaagggagtttgatttattacgaagtcgaaggaagccgcactgctgagcacccggtttc 31703
Query: 412 aatacctggtttgctctcaaatctttctctaagacgtagaacggatgattcttaatgtct 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31704 aatacctggtttgctctcaaatctttctctaagacgtagaacggatgattcttaatgtct 31763
Query: 472 tgtaggctgtctgggattccctcgtgttcattacgcaaatcaaaatattcatcctcataa 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31764 tgtaggctgtctgggattccctcgtgttcattacgcaaatcaaaatattcatcctcataa 31823
Query: 532 tcatcaatcctgttcctattacgtttattc-aaaactttataatgctgtt-aaccattcg 589
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 31824 tcatcaatcctgttcctattacgtttattcaaaaactttataatgctgttaaaccattcg 31883
Query: 590 ttcagtttagcttctcttgtaatcctcttttttcgaactttattttgtaaatgtgctatg 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31884 ttcagtttagcttctcttgtaatcctcttttttcgaactttattttgtaaatgtgctatg 31943
Query: 650 tatcttcgagatacatcttttgca-ccttgtttttctatcg-aagcgatgacatatcgca 707
||||| ||||||||||| |||||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 31944 tatctccgagatacatc-tttgcagccttg-ttttctatcgaaagcgatgacatatcgca 32001
Query: 708 ttatattgaaggctggatttatacgaactcattggttctagttttgatttataacgcact 767
| ||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 32002 tcatattgaaggctgaatttatacgacct-attggttctagttttgatttataacgcact 32060
Query: 768 ggttcaa-tatttcttgaccaacgatat 794
|||||| ||||||||||||||||||||
Sbjct: 32061 tgttcaattatttcttgaccaacgatat 32088
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7601
Number of Sequences: 1807
Number of extensions: 7601
Number of successful extensions: 81
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)