BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZE05FM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1018 1405 0.0
3x_Contig1303 127 4e-29
>3x_Contig1018
Length = 3090
Score = 1405 bits (709), Expect = 0.0
Identities = 770/783 (98%), Gaps = 7/783 (0%)
Strand = Plus / Minus
Query: 162 ttatcaaagcaatgactgacagaacgttttgttatcgcttgcatggatagttttttattt 221
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 3090 ttatcaaagcaatgactgacagaacgttttgttatcgcttgcatggatagtttcttatcg 3031
Query: 222 cacttctccgtgtatctgttaaccatttaacatgagatgcaacggatctaaatacttttt 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3030 cacttctccgtgtatctgttaaccatttaacatgagatgcaacggatctaaatacttttt 2971
Query: 282 gggttccatgtaagattcgaacacatgctcgctcgaatgtaagaaaccattggaatctca 341
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2970 gggttccatgtaagattcgaacacatgctcgctcgaatgtaagacaccattggaatctca 2911
Query: 342 cgcaaatgagttaccctgttaaggcacgtgataatatgaaatttccactcttttccagga 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2910 cgcaaatgagttaccctgttaaggcacgtgataatatgaaatttccactcttttccagga 2851
Query: 402 aagaacgaccccattgattcttgagtatcaatttgaaccatttcatccatcattatgtag 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2850 aagaacgaccccattgattcttgagtatcaatttgaaccatttcatccatcattatgtag 2791
Query: 462 aatatgtcaattgagtaactacgatcaaatcctgatcttttatcaaaatcaggaagttgc 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2790 aatatgtcaattgagtaactacgatcaaatcctgatcttttatcaaaatcaggaagttgc 2731
Query: 522 ttgtggatcatctgttacttttgcaaaattcaaaactctttttcatcaaaaccatttgaa 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2730 ttgtggatcatctgttacttttgcaaaattcaaaactctttttcatcaaaaccatttgaa 2671
Query: 582 actggtaacagctttctggtgtatctttagtccgattgaaacaacgaagttttatataca 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2670 actggtaacagctttctggtgtatctttagtccgattgaaacaacgaagttttatataca 2611
Query: 642 gacaaaatgcagttaacagggttcttaaagaaactaaagaatgaaagggtgtctatagag 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2610 gacaaaatgcagttaacagggttcttaaagaaactaaagaatgaaagggtgtctatagag 2551
Query: 702 ttgaagaatggtaccactgtttggggaatagtgaggagtgtgtcaccgcagatgaacgtc 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2550 ttgaagaatggtaccactgtttggggaatagtgaggagtgtgtcaccgcagatgaacgtc 2491
Query: 762 tctcttactgacgtcaggctgacactccctactaagacctcagaagctaccttggctgcc 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2490 tctcttactgacgtcaggctgacactccctactaagacctcagaagctaccttggctgcc 2431
Query: 822 gtcttattgtcanngtggatcgacacaaggaccagaaaatct-agag-acaactagccct 879
|||||||||||| |||||||||||||||||| || ||||| |||| |||||||| |||
Sbjct: 2430 gtcttattgtca-ggtggatcgacacaaggacaag--aatctaagagaacaactag-cct 2375
Query: 880 cgagttcatcaacattaggggtaatacgataagggcagattattttaccagatagtatca 939
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 2374 cgagttcatcaacattaggggtaatacgataa-ggcagattattttaccagatagtatca 2316
Query: 940 att 942
|||
Sbjct: 2315 att 2313
>3x_Contig1303
Length = 8112
Score = 127 bits (64), Expect = 4e-29
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 87 cgatccatgagatatgaaaagagtaatatctgactttaacatctatatatatatatatat 146
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7394 cgatccatgagatatgaaaagagtaatatctgactttaacatctatatatatatatatac 7453
Query: 147 atatatat 154
||||||||
Sbjct: 7454 atatatat 7461
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,399
Number of Sequences: 1807
Number of extensions: 14399
Number of successful extensions: 3048
Number of sequences better than 1.0e-20: 2
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)