BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZE05RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1682 1084 0.0
>3x_Contig1682
Length = 16889
Score = 1084 bits (547), Expect = 0.0
Identities = 676/711 (95%), Gaps = 6/711 (0%)
Strand = Plus / Minus
Query: 48 accatacaaagtatgtagtaaagcgtgaccggtacgatcagcgacggcacaagttctgta 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14790 accatacaaagtatgtagtaaagcgtgaccggtacgatcagcgacggcacaagttctgta 14731
Query: 108 agcttgaccacctttaccatattctttggattgaccaccaaaggctctttggtaaattct 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14730 agcttgaccacctttaccatattctttggattgaccaccaaaggctctttggtaaattct 14671
Query: 168 accctcttcggttcttgagaatggtacaccgaaatgttccaattcgataatagattttgg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14670 accctcttcggttcttgagaatggtacaccgaaatgttccaattcgataatagattttgg 14611
Query: 228 agcctcacgagtcatgtaatgaatcgaatcttggtcacctaaccaatccgaacccttcac 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14610 agcctcacgagtcatgtaatgaatcgaatcttggtcacctaaccaatccgaacccttcac 14551
Query: 288 ggtatcgtacatatgccatttccaatcatctttatgcatgttacccaacgcagcgttgat 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14550 ggtatcgtacatatgccatttccaatcatctttatgcatgttacccaacgcagcgttgat 14491
Query: 348 cccaccttgcgcagcaacggtatgagatctagtagggaacaacttataaatacatgcagt 407
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 14490 cccaccttgcgcagcaacggtatgagatctagtagggaacaacttagaaatacatgcagt 14431
Query: 408 tttgtatccagcctctgcaagaccaaaagcagcacgtaaaccatcaccaccagcaccaac 467
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 14430 tttgtatccagcctctgcaagaccaaaagcagcacgtaaaccagcaccaccagcaccaac 14371
Query: 468 aacgacacagtcgtattcatgatcgatgatgttatatccatggctggaagatgacccagc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14370 aacgacacagtcgtattcatgatcgatgatgttatatccatggctggaagatgacccagc 14311
Query: 528 ctcttgctgctgtccattgatgtcaccatttgcccgaaatcgtttgtctcaaaaccattt 587
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 14310 ctcttgctgctgtccattgatgtcacca-ttggccgaaatcgtttgtctcaaaaccattt 14252
Query: 588 gagagctaaactttttgg-ttg-aacaatgatttgaaatttgcctgagcaagatcacttt 645
|||||||||||||| ||| ||| | ||||||||||||||| ||||||||||| || |
Sbjct: 14251 gagagctaaactttctggcttgcaccaatgatttgaaattggcctgagcaaggccaactc 14192
Query: 646 tccttcctttaactg-tctaagcatatggggttaagggaaagaagaaaattttgcaaaaa 704
|||||||| | |||| |||||||||||| | || | || || ||| | ||||||||||
Sbjct: 14191 tccttcctcttactgttctaagcatatgtgtatagtgtaatgatgaata-tttgcaaaaa 14133
Query: 705 aaattttttgttgttgatttccatttccaatttccgattacttttactacc 755
||||| || | |||||| ||||| |||||||| | |||||||||||||||
Sbjct: 14132 aaattcttcgctgttga-ttccagttccaattccgtattacttttactacc 14083
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,282
Number of Sequences: 1807
Number of extensions: 15282
Number of successful extensions: 146
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)