BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZE06FM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig287 1550 0.0
>3x_Contig287
Length = 1432
Score = 1550 bits (782), Expect = 0.0
Identities = 811/819 (99%), Gaps = 2/819 (0%)
Strand = Plus / Minus
Query: 87 tttaaaaaggaactattcatattcgaattggactttcagtttgattgtaactatacttta 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 979 tttaaaaaggaactattcatattcgaattggactttcagtttgattgtaactatacttta 920
Query: 147 acttgatcttattgcctgaaggaccagtatcttttttatagaagcgaaataaactacaga 206
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 919 acttgatcttattgcctgaaggaccagtatctgttttatagaagcgaaataaactacaga 860
Query: 207 gccatgttttttttcaaagatttgtcgttgaatataacgcttcatccatcattctttgga 266
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 gccatgtttttcttcaaagatttgtcgttgaatataacgcttcatccatcattctttgga 800
Query: 267 cctcagatgaagagatatttgatgacaaagctactacaagaggtggaaggaacatgtacc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 cctcagatgaagagatatttgatgacaaagctactacaagaggtggaaggaacatgtacc 740
Query: 327 ggtaaattcggatatatcctatgtgttttagactgtgaaaatatcgagattgaacgtgga 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ggtaaattcggatatatcctatgtgttttagactgtgaaaatatcgagattgaacgtgga 680
Query: 387 cggattttgcctacggacgggtcagcagagtttactgttaaatatagagctgtggtatgg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 cggattttgcctacggacgggtcagcagagtttactgttaaatatagagctgtggtatgg 620
Query: 447 aaacctttcaagggagaagttcttgatggtatcgtatctagttgtacaaacttaggtttt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aaacctttcaagggagaagttcttgatggtatcgtatctagttgtacaaacttaggtttt 560
Query: 507 gaagtggaagttggacctttgtctgtcttcgtttccccttttttgatgccagaagatttg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gaagtggaagttggacctttgtctgtcttcgtttccccttttttgatgccagaagatttg 500
Query: 567 actttcaacagtggttccaatcctccatcatatcaatcatcagaacaaattattactaaa 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 actttcaacagtggttccaatcctccatcatatcaatcatcagaacaaattattactaaa 440
Query: 627 ggatctagagtaagattaaaaatcgtcggtgcaagatcggaagtcaactctatttacgcc 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ggatctagagtaagattaaaaatcgtcggtgcaagatcggaagtcaactctatttacgcc 380
Query: 687 attggcagtatcaaggaagattatttgggggtgatatgatatttctttcctagaaccttt 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 attggcagtatcaaggaagattatttgggggtgatatgatatttctttcctagaaccttt 320
Query: 747 cacatttttcacctaatcgcaactatgactatatatagctntggacataaatttccaaat 806
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 319 cacatttttcacctaatcgcaactatgactatatatagctttggacataaatttccaaat 260
Query: 807 tccggncatcattgntatctgcttcatttgtgagcattttgtataatataaaa-aacaaa 865
||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 259 tccggtcatcattgttatctgcttcatttgtgagcattttgtataatataaaagaacaaa 200
Query: 866 ctaattttac-agcagcatggtcaatgtactttcttttt 903
||||||| || ||||||||||||||||||||||||||||
Sbjct: 199 ctaatttaacaagcagcatggtcaatgtactttcttttt 161
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7286
Number of Sequences: 1807
Number of extensions: 7286
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)