BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC9ZE06RM1.SCF screened BAC_end (964 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1548 1160 0.0 >3x_Contig1548 Length = 9830 Score = 1160 bits (585), Expect = 0.0 Identities = 672/695 (96%), Gaps = 6/695 (0%) Strand = Plus / Minus Query: 48 tctggatcactttgctgtggttttgtagttgaggcagtcgtactacctgttgaacccccg 107 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5478 tctggatcactttgctgtggttttgtagttgaggcagtcgtactacctgttgaacccccg 5419 Query: 108 gcattcttcttctgttctgctttctgtgattgtttgcttgtcgtactcgtcgtcttcaaa 167 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5418 gcattcttcttctgttctgctttctgtgattgtttgcttgtcgtactcgtcgtcttcaaa 5359 Query: 168 tttggcgtacttgagtttcgcggagatgctaggtttgtagttggagatgatgctttaggt 227 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5358 tttggcgtacttgagtttcgcggagatgctaggtttgtagttggagatgatgctttaggt 5299 Query: 228 agagctaatggctgttctgtaaccatagtatcgaatggcgtatgcagatcactgccaaaa 287 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 5298 agagctaatggctgttctgtaaccatagtatcgaatggcgtaggcagatcactgccaaaa 5239 Query: 288 tctgagccactgggttccagcccgttctctactttgccaaattcgaatgatttggaacgt 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5238 tctgagccactgggttccagcccgttctctactttgccaaattcgaatgatttggaacgt 5179 Query: 348 ttatttgaagataaatcttccggttcagaattctttctcttgggcgattttgccatcgta 407 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5178 ttatttgaagataaatcttccggttcagaattctttctcttgggcgattttgccatcgta 5119 Query: 408 ttttatactaattagaccaatagtgatagttttctctggtgaaacacggnggtaaaaaga 467 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 5118 ttttatactaattagaccaatagtgatagttttctctggtgaaacacgggggtaaaaaga 5059 Query: 468 atcgtattggatacttngagacacctattgcacttgtncc-anaatgcangc-aataaac 525 |||||||||||||||| |||||||||||||||||| || | |||||| || ||||||| Sbjct: 5058 atcgtattggatacttgaggacacctattgcacttgtcccaaaaatgcaggcaaataaac 4999 Query: 526 tatgaaaagaattagtcaatctttaaaaacaagtccaaatgcggnctatcaattaaaatc 585 |||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||| Sbjct: 4998 tatgaaaagaataagtcaatctttaaaaacaggtccaaatgcggcctatcaattaaaatc 4939 Query: 586 cagtttcagcgaaaaacgtacaccctt-atgattttcacaaagataaaaaaacgtgcgag 644 |||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||| Sbjct: 4938 cagtttcagcgaaaaacgtacaaccttaatgatttcaacaaagataaaaaaacgtgcgag 4879 Query: 645 tatttaacatttatgctaaaaagttctatctagttcctacctctttcttcatttaaaggc 704 |||| |||| ||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct: 4878 tattaaaca-ttatgctaaaaagttctatctagttcctacctctttcttcatttagatgc 4820 Query: 705 tattgtttgctggcctttgaattttttcaagattg 739 ||||||||||||| ||||| ||||||||||||||| Sbjct: 4819 tattgtttgctgg-ctttg-attttttcaagattg 4787 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8179 Number of Sequences: 1807 Number of extensions: 8179 Number of successful extensions: 60 Number of sequences better than 1.0e-20: 1 length of query: 964 length of database: 10,358,551 effective HSP length: 16 effective length of query: 948 effective length of database: 10,329,639 effective search space: 9792497772 effective search space used: 9792497772 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)