BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC9ZE06RM1.SCF screened BAC_end
         (964 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1548                                                        1160   0.0  

>3x_Contig1548 
          Length = 9830

 Score = 1160 bits (585), Expect = 0.0
 Identities = 672/695 (96%), Gaps = 6/695 (0%)
 Strand = Plus / Minus

                                                                        
Query: 48   tctggatcactttgctgtggttttgtagttgaggcagtcgtactacctgttgaacccccg 107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5478 tctggatcactttgctgtggttttgtagttgaggcagtcgtactacctgttgaacccccg 5419

                                                                        
Query: 108  gcattcttcttctgttctgctttctgtgattgtttgcttgtcgtactcgtcgtcttcaaa 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5418 gcattcttcttctgttctgctttctgtgattgtttgcttgtcgtactcgtcgtcttcaaa 5359

                                                                        
Query: 168  tttggcgtacttgagtttcgcggagatgctaggtttgtagttggagatgatgctttaggt 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5358 tttggcgtacttgagtttcgcggagatgctaggtttgtagttggagatgatgctttaggt 5299

                                                                        
Query: 228  agagctaatggctgttctgtaaccatagtatcgaatggcgtatgcagatcactgccaaaa 287
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 5298 agagctaatggctgttctgtaaccatagtatcgaatggcgtaggcagatcactgccaaaa 5239

                                                                        
Query: 288  tctgagccactgggttccagcccgttctctactttgccaaattcgaatgatttggaacgt 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5238 tctgagccactgggttccagcccgttctctactttgccaaattcgaatgatttggaacgt 5179

                                                                        
Query: 348  ttatttgaagataaatcttccggttcagaattctttctcttgggcgattttgccatcgta 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5178 ttatttgaagataaatcttccggttcagaattctttctcttgggcgattttgccatcgta 5119

                                                                        
Query: 408  ttttatactaattagaccaatagtgatagttttctctggtgaaacacggnggtaaaaaga 467
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 5118 ttttatactaattagaccaatagtgatagttttctctggtgaaacacgggggtaaaaaga 5059

                                                                        
Query: 468  atcgtattggatacttngagacacctattgcacttgtncc-anaatgcangc-aataaac 525
            ||||||||||||||||   |||||||||||||||||| || | |||||| || |||||||
Sbjct: 5058 atcgtattggatacttgaggacacctattgcacttgtcccaaaaatgcaggcaaataaac 4999

                                                                        
Query: 526  tatgaaaagaattagtcaatctttaaaaacaagtccaaatgcggnctatcaattaaaatc 585
            |||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 4998 tatgaaaagaataagtcaatctttaaaaacaggtccaaatgcggcctatcaattaaaatc 4939

                                                                        
Query: 586  cagtttcagcgaaaaacgtacaccctt-atgattttcacaaagataaaaaaacgtgcgag 644
            |||||||||||||||||||||| |||| |||||||  |||||||||||||||||||||||
Sbjct: 4938 cagtttcagcgaaaaacgtacaaccttaatgatttcaacaaagataaaaaaacgtgcgag 4879

                                                                        
Query: 645  tatttaacatttatgctaaaaagttctatctagttcctacctctttcttcatttaaaggc 704
            |||| |||| ||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 4878 tattaaaca-ttatgctaaaaagttctatctagttcctacctctttcttcatttagatgc 4820

                                               
Query: 705  tattgtttgctggcctttgaattttttcaagattg 739
            ||||||||||||| ||||| |||||||||||||||
Sbjct: 4819 tattgtttgctgg-ctttg-attttttcaagattg 4787


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8179
Number of Sequences: 1807
Number of extensions: 8179
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 964
length of database: 10,358,551
effective HSP length: 16
effective length of query: 948
effective length of database: 10,329,639
effective search space: 9792497772
effective search space used: 9792497772
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)