BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC9ZE07FM1.SCF screened BAC_end
         (921 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1294                                                        1594   0.0  

>3x_Contig1294 
          Length = 6938

 Score = 1594 bits (804), Expect = 0.0
 Identities = 825/831 (99%), Gaps = 1/831 (0%)
 Strand = Plus / Minus

                                                                        
Query: 90   attagccactgtattctttcttctccaatgggttaatgctaataaatatgtacagataca 149
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5924 attagccactgtattctttcttctccaatgggttaatgctaataaatatgtacagataca 5865

                                                                        
Query: 150  tactaaaagttacaaattcaataactcaacgcaggttgaagttatccattattagtttcg 209
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5864 tactaaaagttacaaattcaataactcaacgcaggttgaagttatccattattagtttcg 5805

                                                                        
Query: 210  ggatacagagcaccccatttatctcatcatctatcaattttagagcggatattcccatca 269
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5804 ggatacagagcaccccatttatctcatcatctatcaattttagagcggatattcccatca 5745

                                                                        
Query: 270  tgctatgatatatatcagggtcatcttgatcattcttggcaaatccacccaccatcttat 329
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5744 tgctatgatatatatcagggtcatcttgatcattcttggcaaatccacccaccatcttat 5685

                                                                        
Query: 330  tctgagtttgattcagtaaataatctcgtatcagtggaacatcaataagctgactccaac 389
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5684 tctgagtttgattcagtaaataatctcgtatcagtggaacatcaataagctgactccaac 5625

                                                                        
Query: 390  gttggggctctaagattcttaaagaatttaaacaccaaaacgcgtagcacgtatccgcaa 449
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5624 gttggggctctaagattcttaaagaatttaaacaccaaaacgcgtagcacgtatccgcaa 5565

                                                                        
Query: 450  gtttattttctctcccgttaaacccacctgagtcatccggatcgtaatcgtcgtttaaat 509
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5564 gtttattttctctcccgttaaacccacctgagtcatccggatcgtaatcgtcgtttaaat 5505

                                                                        
Query: 510  cctgttcaacaaagacaccaatagcagaaacctgtctgttcaccaaccaatgaagagtat 569
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5504 cctgttcaacaaagacaccaatagcagaaacctgtctgttcaccaaccaatgaagagtat 5445

                                                                        
Query: 570  cctgcctaaacgaggcaggaatgttttgtagttgatttagtagagatagagcagataacg 629
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5444 cctgcctaaacgaggcaggaatgttttgtagttgatttagtagagatagagcagataacg 5385

                                                                        
Query: 630  cgcatgatgtgtatccaccgtgtggctcgttccagtcaccaaatccccccattgtgcact 689
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 5384 cgcatgatgtgtatccaccgtgtggctcgttccagtcaccaaatccccccattgtg-act 5326

                                                                        
Query: 690  gacgtgacatgatatattgtagcagcttagaaacgttaatataccgagagaaatccgatt 749
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5325 gacgtgacatgatatattgtagcagcttagaaacgttaatataccgagagaaatccgatt 5266

                                                                        
Query: 750  ctgatcgacatccgataagatataggatcgatactgcaatataacagaacctcagatcat 809
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5265 ctgatcgacatccgataagatataggatcgatactgcaatataacagaacctcagatcat 5206

                                                                        
Query: 810  gggaatcgaacttcgatggatatccagcattatccagaaaaagagtaaatgacccatcan 869
            |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||| 
Sbjct: 5205 gggaatcgaacttcgatggatatccagcattatccagaaaagaggtaaatgacccatcag 5146

                                                               
Query: 870  gtaactgacaagatgagatgaatttgcccaacgtatcaccgttcaacttct 920
            ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 5145 gtaactgacaagatgagatgaatttgcccaacgtatcacggttcaacttct 5095


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6078
Number of Sequences: 1807
Number of extensions: 6078
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)