BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC9ZE07RM1.SCF screened BAC_end
         (936 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1749                                                        1051   0.0  

>3x_Contig1749 
          Length = 22923

 Score = 1051 bits (530), Expect = 0.0
 Identities = 564/570 (98%), Gaps = 4/570 (0%)
 Strand = Plus / Minus

                                                                         
Query: 49    cggtttacaaagcgatttattattccccttatgaaagtagctgcactgtttgaaatacag 108
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13263 cggtttacaaagcgatttattattccccttatgaaagtagctgcactgtttgaaatacag 13204

                                                                         
Query: 109   cgaaccgaaacacgaatacagtgcagcaaattcccctatagcagtatggtgggctccatt 168
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13203 cgaaccgaaacacgaatacagtgcagcaaattcccctatagcagtatggtgggctccatt 13144

                                                                         
Query: 169   gccttatgaaccaagctatccttactggcctgacggatataccccaagtgtatcctgtag 228
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13143 gccttatgaaccaagctatccttactggcctgacggatataccccaagtgtatcctgtag 13084

                                                                         
Query: 229   tgccatgttctaaggtatgcagatttccgcatcttagcgcctaattattatttgtatttt 288
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13083 tgccatgttctaaggtatgcagatttccgcatcttagcgcctaattattatttgtatttt 13024

                                                                         
Query: 289   gtttagaacgattgggcattttgtttgtggtttagataagggaaattatcttccatacaa 348
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13023 gtttagaacgattgggcattttgtttgtggtttagataagggaaattatcttccatacaa 12964

                                                                         
Query: 349   aaatgtcatttccgttagcgtatatgaaaaaaaacatggatcgcagataaaagttaagat 408
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12963 aaatgtcatttccgttagcgtatatgaaaaaaaacatggatcgcagataaaagttaagat 12904

                                                                         
Query: 409   aagccattccattctcttctatgccatttacagtgttatcctcaaagttagaattcggat 468
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12903 aagccattccattctcttctatgccatttacagtgttatcctcaaagttagaattcggat 12844

                                                                         
Query: 469   acaaacgacagttctcgtacttgttattggcaagcgaaacttcaatggctaagtgaagag 528
             ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 12843 acaaacgacagttctcgtacttgttattggcaagcgaaacttcaatggctaggtgaagag 12784

                                                                         
Query: 529   aaagtatataaactgctcagttatggaattaat-aagtagcagagg-tcatgagatgtta 586
             ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 12783 aaagtatataaactgctcagttatggaattaataaagtagcagaggttcatgagatgtta 12724

                                           
Query: 587   gatctcg-ttaatttcgaagt-tcaatttt 614
             ||||||| |||||| |||||| ||||||||
Sbjct: 12723 gatctcgtttaattccgaagtgtcaatttt 12694


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6875
Number of Sequences: 1807
Number of extensions: 6875
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)