BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZE09FM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1593 932 0.0
3x_Contig1374 573 e-163
3x_Contig1557 149 1e-35
3x_Contig1518 149 1e-35
3x_Contig1446 149 1e-35
3x_Contig1428 149 1e-35
3x_Contig1663 147 5e-35
3x_Contig1521 147 5e-35
3x_Contig1741 113 6e-25
3x_Contig1272 111 3e-24
>3x_Contig1593
Length = 10902
Score = 932 bits (470), Expect = 0.0
Identities = 534/550 (97%), Gaps = 4/550 (0%)
Strand = Plus / Minus
Query: 370 catttggctattggaatataatttatccaa-ctccgctcagtgccgtccgctttagtggc 428
||||||||||||||||||| ||||| |||| | |||||||||||||||||||||||||||
Sbjct: 10898 catttggctattggaatatgatttaaccaaacaccgctcagtgccgtccgctttagtggc 10839
Query: 429 agcgcaatggtaacatgggcgtttcaatcaatctccgcgaatatggaga-cagagctgct 487
||||||||||||||||||||||| ||| | | ||||||||| ||||||| ||||||||||
Sbjct: 10838 agcgcaatggtaacatgggcgttacaaactaactccgcgaaaatggagaacagagctgct 10779
Query: 488 ctggagtgatatatctgttagataacttgtgcctgtaatttttcgaatgaaagtgtctga 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10778 ctggagtgatatatctgttagataacttgtgcctgtaatttttcgaatgaaagtgtctga 10719
Query: 548 gcttttatttgtacttaaatataataatttccaataccgtcactaacgttgacatataaa 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10718 gcttttatttgtacttaaatataataatttccaataccgtcactaacgttgacatataaa 10659
Query: 608 tgagtatgttgggagggggaatggaaagattgatgtgaaaaaaagatatcgcaaagttgg 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10658 tgagtatgttgggagggggaatggaaagattgatgtgaaaaaaagatatcgcaaagttgg 10599
Query: 668 aaccttcatagaaggaattgaaatgaatatgatgaagtttgataaatatgaagtatcaaa 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10598 aaccttcatagaaggaattgaaatgaatatgatgaagtttgataaatatgaagtatcaaa 10539
Query: 728 accgtacaaagtttattcgcagtcatcaacgaattgtgttaaataatagatcattcaaaa 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10538 accgtacaaagtttattcgcagtcatcaacgaattgtgttaaataatagatcattcaaaa 10479
Query: 788 caacgagggtgattattgcttcttaccatcagatggttcgtccgaatttttgttat-ttt 846
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 10478 caacgagggtgattattgcttcttaccatcagatggttcgtccgaatttttggtatcttt 10419
Query: 847 tgcaggtttccgaggaagctttttcagaaatttcctcttctttttcatctaagttgaagt 906
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 10418 agcagg-ttccgaggaagctttttcaggaatttcctcttctttttcatctaagttgatgt 10360
Query: 907 catctttgat 916
||||||||||
Sbjct: 10359 catctttgat 10350
>3x_Contig1374
Length = 8985
Score = 573 bits (289), Expect = e-163
Identities = 299/301 (99%), Gaps = 1/301 (0%)
Strand = Plus / Plus
Query: 85 tctgccaggtgaaacaagtgtaacgttgtctatatatatatatatatatatatatatata 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8676 tctgccaggtgaaacaagtgtaacgttgtctatatatatatatatatatatatatatata 8735
Query: 145 tatgtatgtatgtaaataaaggaaagtttgaggatttcaaaagtccagtccgaacgagag 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8736 tatgtatgtatgtaaataaaggaaagtttgaggatttcaaaagtccagtccgaacgagag 8795
Query: 205 ctaagaaaaaaatataaagaaaactccgatacggggagtcgaaccccggtctccacggtg 264
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8796 ctaagaaaaaaataaaaagaaaactccgatacggggagtcgaaccccggtctccacggtg 8855
Query: 265 aaagcgtgatgtgatagccgttacactatatcggatatttggatgaaaatatagtttttc 324
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 8856 aaagcgtgatgtgatagccgttacactatatcggatatttggatgaaaatatag-ttttc 8914
Query: 325 acagctccatcatgcggttcagtggagaggtccatcatttgaaatcatttggctattgga 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8915 acagctccatcatgcggttcagtggagaggtccatcatttgaaatcatttggctattgga 8974
Query: 385 a 385
|
Sbjct: 8975 a 8975
>3x_Contig1557
Length = 10562
Score = 149 bits (75), Expect = 1e-35
Identities = 75/75 (100%)
Strand = Plus / Minus
Query: 227 actccgatacggggagtcgaaccccggtctccacggtgaaagcgtgatgtgatagccgtt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2614 actccgatacggggagtcgaaccccggtctccacggtgaaagcgtgatgtgatagccgtt 2555
Query: 287 acactatatcggata 301
|||||||||||||||
Sbjct: 2554 acactatatcggata 2540
>3x_Contig1518
Length = 11021
Score = 149 bits (75), Expect = 1e-35
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 227 actccgatacggggagtcgaaccccggtctccacggtgaaagcgtgatgtgatagccgtt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5745 actccgatacggggagtcgaaccccggtctccacggtgaaagcgtgatgtgatagccgtt 5804
Query: 287 acactatatcggata 301
|||||||||||||||
Sbjct: 5805 acactatatcggata 5819
>3x_Contig1446
Length = 10598
Score = 149 bits (75), Expect = 1e-35
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 227 actccgatacggggagtcgaaccccggtctccacggtgaaagcgtgatgtgatagccgtt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3232 actccgatacggggagtcgaaccccggtctccacggtgaaagcgtgatgtgatagccgtt 3291
Query: 287 acactatatcggata 301
|||||||||||||||
Sbjct: 3292 acactatatcggata 3306
>3x_Contig1428
Length = 9146
Score = 149 bits (75), Expect = 1e-35
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 227 actccgatacggggagtcgaaccccggtctccacggtgaaagcgtgatgtgatagccgtt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6382 actccgatacggggagtcgaaccccggtctccacggtgaaagcgtgatgtgatagccgtt 6441
Query: 287 acactatatcggata 301
|||||||||||||||
Sbjct: 6442 acactatatcggata 6456
>3x_Contig1663
Length = 13533
Score = 147 bits (74), Expect = 5e-35
Identities = 74/74 (100%)
Strand = Plus / Minus
Query: 227 actccgatacggggagtcgaaccccggtctccacggtgaaagcgtgatgtgatagccgtt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 actccgatacggggagtcgaaccccggtctccacggtgaaagcgtgatgtgatagccgtt 870
Query: 287 acactatatcggat 300
||||||||||||||
Sbjct: 869 acactatatcggat 856
>3x_Contig1521
Length = 8057
Score = 147 bits (74), Expect = 5e-35
Identities = 80/82 (97%)
Strand = Plus / Plus
Query: 227 actccgatacggggagtcgaaccccggtctccacggtgaaagcgtgatgtgatagccgtt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4224 actccgatacggggagtcgaaccccggtctccacggtgaaagcgtgatgtgatagccgtt 4283
Query: 287 acactatatcggatatttggat 308
||||||||||||| | ||||||
Sbjct: 4284 acactatatcggacacttggat 4305
>3x_Contig1741
Length = 21706
Score = 113 bits (57), Expect = 6e-25
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 228 ctccgatacggggagtcgaaccccggtctccacggtgaaagcgtgatgtgatagccgtta 287
||||||||| ||||||||||||| |||||||||||||| |||||| ||||||||||||||
Sbjct: 9273 ctccgataccgggagtcgaacccgggtctccacggtgagagcgtggtgtgatagccgtta 9332
Query: 288 cactatatcggat 300
|||||||||||||
Sbjct: 9333 cactatatcggat 9345
>3x_Contig1272
Length = 8315
Score = 111 bits (56), Expect = 3e-24
Identities = 68/72 (94%)
Strand = Plus / Plus
Query: 228 ctccgatacggggagtcgaaccccggtctccacggtgaaagcgtgatgtgatagccgtta 287
||||||||| ||||||||||||| |||||||||||||| |||||| ||||||||||||||
Sbjct: 5144 ctccgataccgggagtcgaacccgggtctccacggtgagagcgtggtgtgatagccgtta 5203
Query: 288 cactatatcgga 299
||||||||||||
Sbjct: 5204 cactatatcgga 5215
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,875
Number of Sequences: 1807
Number of extensions: 18875
Number of successful extensions: 4754
Number of sequences better than 1.0e-20: 10
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)